BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000076.1_g1400.1
(783 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 119 5e-28
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 119 5e-28
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 120 1e-27
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 114 7e-26
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 89 2e-20
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 3/268 (1%)
Query: 436 YAPSVSHLMFVDDLFFFGKASNNNILALKNILDEYSNCSGQLINFQKSSIHLSSNCDAEK 495
Y ++HL F DDL F ++I + I ++++ SG I+ +KS+I+++ D +K
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63
Query: 496 REMVIRTLRVKAMKIDDVYLGNYLLKSKHKISSYDGILNKVENKLKGWKKNSLSHAGRTI 555
+ ++ + + + YLG LL K S Y ++ K+ ++ W LS AGR
Sbjct: 64 AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 556 LIKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNTKKTKMHYLNWKKLRDPQKDG 615
LI S + S+ +++S +P I +I+ +F W TK + W + P+ +G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 616 GLGIRNMGVVNQALVGKLVWRFQSEPTALWVRLLTSKYLKHEDFWKFKAKPSTTSTATWR 675
GLGIR++ N+ + KL+WR S T+LWV+ L L+ FW +T + W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWK 240
Query: 676 SLLEMREFIAKGRCYLVGNGKDIKIWND 703
+L+ R + + + NG + W D
Sbjct: 241 KILKHRALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 3/268 (1%)
Query: 436 YAPSVSHLMFVDDLFFFGKASNNNILALKNILDEYSNCSGQLINFQKSSIHLSSNCDAEK 495
Y ++HL F DDL F ++I + I ++++ SG I+ +KS+I+++ D +K
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK 63
Query: 496 REMVIRTLRVKAMKIDDVYLGNYLLKSKHKISSYDGILNKVENKLKGWKKNSLSHAGRTI 555
+ ++ + + + YLG LL K S Y ++ K+ ++ W LS AGR
Sbjct: 64 AD-ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 556 LIKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNTKKTKMHYLNWKKLRDPQKDG 615
LI S + S+ +++S +P I +I+ +F W TK + W + P+ +G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 616 GLGIRNMGVVNQALVGKLVWRFQSEPTALWVRLLTSKYLKHEDFWKFKAKPSTTSTATWR 675
GLGIR++ N+ + KL+WR S T+LWV+ L L+ FW +T + W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWK 240
Query: 676 SLLEMREFIAKGRCYLVGNGKDIKIWND 703
+L+ R + + + NG + W D
Sbjct: 241 KILKHRALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 3/264 (1%)
Query: 440 VSHLMFVDDLFFFGKASNNNILALKNILDEYSNCSGQLINFQKSSIHLSSNCDAEKREMV 499
++HL F DDL F ++I + I ++++ SG I+ +KS+I+++ D +K + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD-I 66
Query: 500 IRTLRVKAMKIDDVYLGNYLLKSKHKISSYDGILNKVENKLKGWKKNSLSHAGRTILIKS 559
+ + + + YLG LL K S Y ++ K+ ++ W LS AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 560 ELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNTKKTKMHYLNWKKLRDPQKDGGLGI 619
+ S+ +++S +P I +I+ +F W TK + W + P+ +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 620 RNMGVVNQALVGKLVWRFQSEPTALWVRLLTSKYLKHEDFWKFKAKPSTTSTATWRSLLE 679
R++ N+ + KL+WR S T+LWV+ L L+ FW +T + W+ +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGN-TTLGSWMWKKILK 244
Query: 680 MREFIAKGRCYLVGNGKDIKIWND 703
R + + + NG + W D
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFD 268
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 144/295 (48%), Gaps = 13/295 (4%)
Query: 2 KGKIPFRFEAHWTLHNEFDEMMSESWG-QIN-GGFIQKLPQLAGKPKKWSK----DQVGH 55
+ K FR+ + + H F ++ +W QI G + L + KK K G+
Sbjct: 327 RSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGN 386
Query: 56 LFNKLKETKEKLLNIQNR---PPSQLVLEDENRLVGKLNELRKMEEVFWVQRAKKHWVQD 112
+ +K KE + L +IQ++ PS + E+ K N E F+ Q+++ W+QD
Sbjct: 387 IQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQD 446
Query: 113 IDRNTSFFHLSVLNRKRKNNILTVKLEDQTWSDNPAKITNVFLEHFYRVSRAEQISAFPE 172
D NT FFH +L + KN I ++++D +N ++ + + ++ + ++ P+
Sbjct: 447 GDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPD 506
Query: 173 VLELTN--RPLSTSDN--ASIGTPPSKDEIWQTIKAMKSCKAPGPDGFSTVFYKKCWEII 228
++ P +D + + PS EI + AM KAPGPD F+ F+ + W ++
Sbjct: 507 SVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVV 566
Query: 229 GDEVTSQIRSIFESGHLPGNLNHTNIALIPEVKTPERPIDYRPIALCNVLYRVVT 283
D + ++ F +GHL N T I LIP+V ++ +RP++ C V+Y+++T
Sbjct: 567 KDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 89.4 bits (220), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 563 SIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNTKKTKMHYLNWKKL-RDPQKDGGLGIRN 621
++P+Y +S + K + K+ FWW K K+ ++ W+KL + + DGGLG R+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 622 MGVVNQALVGKLVWRFQSEPTALWVRLLTSKYLKHEDFWKFKAKPSTTSTATWRSLLEMR 681
+G NQAL+ K +R +P L RLL S+Y H + T + WRS++ R
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSM--MECSVGTRPSYAWRSIIHGR 119
Query: 682 EFIAKGRCYLVGNGKDIKIWND 703
E +++G +G+G K+W D
Sbjct: 120 ELLSRGLLRTIGDGIHTKVWLD 141