BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000077.1_g0110.1
(481 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 410 e-133
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 410 e-133
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 223 8e-70
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 85 1e-19
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 81 1e-17
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 410 bits (1055), Expect = e-133, Method: Compositional matrix adjust.
Identities = 199/429 (46%), Positives = 279/429 (65%), Gaps = 6/429 (1%)
Query: 9 LGCKWVFKLKQKSDGTIERYKARLVAKGFHRQEGVDYEETFSLVVKANTRRMVLTIAIAK 68
+GCKWV+K+K SDGTIERYKARLVAKG+ +QEG+D+ ETFS V K + +++L I+
Sbjct: 127 IGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIY 186
Query: 69 SWNIKQLDVSNAFLHGELDEDVYMIQPPGFIQPGSDKM----VCHFLKALYGLKQAPRAW 124
++ + QLD+SNAFL+G+LDE++YM PPG+ D + VC+ K++YGLKQA R W
Sbjct: 187 NFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQW 246
Query: 125 FNKFATFLLAYGFQKSKSDHSMFTFHQPTSTMILLLYVDDIILTGNSVSQISTLIKDLST 184
F KF+ L+ +GF +S SDH+ F T + +L+YVDDII+ N+ + + L L +
Sbjct: 247 FLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKS 306
Query: 185 SFKMKDLGPLAYFLGIEVTTNLTKRQLLLTQNKYTLQLLQKVTMLDSKPSQLPVSSGKRV 244
FK++DLGPL YFLG+E+ + + + Q KY L LL + +L KPS +P+
Sbjct: 307 CFKLRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTF 364
Query: 245 SLTEGEDLPNPTEYRSLVGALQYLTLTRPDISFVVNYTAQFMHKPTTVHMVIVKKIFRFL 304
S G D + YR L+G L YL +TR DISF VN +QF P H V KI ++
Sbjct: 365 SAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYI 424
Query: 305 KGSMGSGITLSAGDSTILTAYSDSDWAGCPDSRKSTRGYCICLGNSLISWSSKKQATVAK 364
KG++G G+ S+ L +SD+ + C D+R+ST GYC+ LG SLISW SKKQ V+K
Sbjct: 425 KGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 365 SSTEAEYKSLSNAATELVWLSYLMDELRMPLDRPFCLFCDNISVKYLASNPIFHARTKHI 424
SS EAEY++LS A E++WL+ EL++PL +P LFCDN + ++A+N +FH RTKHI
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHI 544
Query: 425 EVDFHYVRD 433
E D H VR+
Sbjct: 545 ESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 410 bits (1055), Expect = e-133, Method: Compositional matrix adjust.
Identities = 199/429 (46%), Positives = 279/429 (65%), Gaps = 6/429 (1%)
Query: 9 LGCKWVFKLKQKSDGTIERYKARLVAKGFHRQEGVDYEETFSLVVKANTRRMVLTIAIAK 68
+GCKWV+K+K SDGTIERYKARLVAKG+ +QEG+D+ ETFS V K + +++L I+
Sbjct: 127 IGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIY 186
Query: 69 SWNIKQLDVSNAFLHGELDEDVYMIQPPGFIQPGSDKM----VCHFLKALYGLKQAPRAW 124
++ + QLD+SNAFL+G+LDE++YM PPG+ D + VC+ K++YGLKQA R W
Sbjct: 187 NFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQW 246
Query: 125 FNKFATFLLAYGFQKSKSDHSMFTFHQPTSTMILLLYVDDIILTGNSVSQISTLIKDLST 184
F KF+ L+ +GF +S SDH+ F T + +L+YVDDII+ N+ + + L L +
Sbjct: 247 FLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKS 306
Query: 185 SFKMKDLGPLAYFLGIEVTTNLTKRQLLLTQNKYTLQLLQKVTMLDSKPSQLPVSSGKRV 244
FK++DLGPL YFLG+E+ + + + Q KY L LL + +L KPS +P+
Sbjct: 307 CFKLRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTF 364
Query: 245 SLTEGEDLPNPTEYRSLVGALQYLTLTRPDISFVVNYTAQFMHKPTTVHMVIVKKIFRFL 304
S G D + YR L+G L YL +TR DISF VN +QF P H V KI ++
Sbjct: 365 SAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYI 424
Query: 305 KGSMGSGITLSAGDSTILTAYSDSDWAGCPDSRKSTRGYCICLGNSLISWSSKKQATVAK 364
KG++G G+ S+ L +SD+ + C D+R+ST GYC+ LG SLISW SKKQ V+K
Sbjct: 425 KGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 365 SSTEAEYKSLSNAATELVWLSYLMDELRMPLDRPFCLFCDNISVKYLASNPIFHARTKHI 424
SS EAEY++LS A E++WL+ EL++PL +P LFCDN + ++A+N +FH RTKHI
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHI 544
Query: 425 EVDFHYVRD 433
E D H VR+
Sbjct: 545 ESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 223 bits (567), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
Query: 156 MILLLYVDDIILTGNSVSQISTLIKDLSTSFKMKDLGPLAYFLGIEVTTNLTKRQLLLTQ 215
M LLLYVDDI+LTG+S + ++ LI LS++F MKDLGP+ YFLGI++ T+ L L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTH--PSGLFLSQ 58
Query: 216 NKYTLQLLQKVTMLDSKPSQLPVSSGKRVSLTEGEDLPNPTEYRSLVGALQYLTLTRPDI 275
KY Q+L MLD KP P+ S++ + P+P+++RS+VGALQYLTLTRPDI
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDI 117
Query: 276 SFVVNYTAQFMHKPTTVHMVIVKKIFRFLKGSMGSGITLSAGDSTILTAYSDSDWAGCPD 335
S+ VN Q MH+PT ++K++ R++KG++ G+ + + A+ DSDWAGC
Sbjct: 118 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177
Query: 336 SRKSTRGYCICLGNSLISWSSKKQATVAKSSTEAEYKSLSNAATELVWLS 385
+R+ST G+C LG ++ISWS+K+Q TV++SSTE EY++L+ A EL W S
Sbjct: 178 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 85.1 bits (209), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 267 YLTLTRPDISFVVNYTAQFMHKPTTVHMVIVKKIFRFLKGSMGSGITLSAGDSTILTAYS 326
YLT+TRPD++F VN +QF T M V K+ ++KG++G G+ SA L A++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 327 DSDWAGCPDSRKSTRGYC 344
DSDWA CPD+R+S G+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 80.9 bits (198), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 7/76 (9%)
Query: 6 QALLGCKWVFKLKQKSDGTIERYKARLVAKGFHRQEGVDYEETFSLVVKANTRRMVLTIA 65
Q +LGCKWVFK K SDGT++R KARLVAKGFH++EG+ + ET+S VV+ T R +L +A
Sbjct: 66 QNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
Query: 66 IAKSWNIKQLDVSNAF 81
+QL+V +
Sbjct: 126 -------QQLEVGQSI 134