BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000077.1_g0140.1
(485 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 62 3e-10
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 58 7e-09
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 52 5e-07
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 14 FITEKLDDSNFLMWKDQVETLLGTYDLLGFVNGTIEEPPQIKIIHGVEQVNPDFQLWRSK 73
F+T L+ N+ +W++ ETL ++ +LG ++G+ P + + W+ +
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE------------KRWKER 70
Query: 74 EGFVRSYLKSILSKSVYFDIYGLQ-TAKEIWDYLELTNNEGIESKKDQLRRKLQTIKNGN 132
+G V+ ++ ++ S+ I + TA+++W LE + E++ Q +L+T +
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 133 A---EYLRELKLIVDSLISVHDKISESELVRLVIQGLNSDYDQFIIAIRANNEQLTLAHL 189
EY ++LK + D L +V IS+ LV ++ GL YD + I+ + +
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 190 KSRLVQHE 197
+S L+ E
Sbjct: 191 RSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 5 LFPISSVTSFITEKLD--DSNFLMWKDQVETLLGTYDLLGFVNGTIEEPPQIKIIHGVEQ 62
++ +S++ S I LD +SN+ W++ T ++D++G ++GT+ +
Sbjct: 10 IYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-------LPTNAND 62
Query: 63 VNPDFQLWRSKEGFVRSYLKSILS-KSVYFDIYGLQTAKEIWDYLELTNNEGIESKKDQL 121
VN W+ ++G V+ L L+ K T+++IW ++ +++ +L
Sbjct: 63 VN-----WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRL 117
Query: 122 RRKLQTIKNGN---AEYLRELKLIVDSLISVHDKISESELVRLVIQGLNSDYDQFIIAIR 178
+L+T G+ A+Y R++K + DSL +V +++ LV V+ GLN +D I I+
Sbjct: 118 DSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIK 177
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 8 ISSVTSFITEKL--DDSNFLMWKDQVETLLGTYDLLGFVNGTIEEPPQIKIIHGVEQVNP 65
I + F +KL D+ N++ WK + + L GF++GT+ +P + +P
Sbjct: 24 IHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------DPFSP 74
Query: 66 DFQLWRSKEGFVRSYLKSILSKSVYFDIYGLQTAKEIWDYLELTNNEGIESKKDQLRRKL 125
+Q W V +L + ++ + + +TA ++W+ L ++ K QLRR+L
Sbjct: 75 LYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRL 134
Query: 126 QTIKNGN 132
T++ G
Sbjct: 135 ATLRQGG 141