BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000077.1_g0160.1
         (319 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801...    83   1e-19
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    47   2e-05

>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
          Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
          Length = 97

 Score = 82.8 bits (203), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 8  QLPRFCGKIFDQWCIQMKAIFGFQEIWEVVEFGYEEPVDQVAHEALSQVQKDSLRENKKK 67
          Q+P      +D W ++MKAI G  ++WE+VE G+ EP ++    +LSQ QKD LR+++K+
Sbjct: 9  QVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENE---GSLSQTQKDGLRDSRKR 65

Query: 68 DKKALFFLYQAVDEIIFEKISRVERAKE 95
          DKKAL  +YQ +DE  FEK+     AK+
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKD 93


>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 17  FDQWCIQMKAIFGFQEIWEVVEFGYEEPVDQVAHEALSQVQKDSL---RENKKKDKKALF 73
           ++ W   MK     + +W++V++G    + ++  E  ++++   L   R++  KD KAL 
Sbjct: 19  YEIWAPIMKTSLAEKGLWDIVKYGIPPDLSKIP-ELATKIRTQDLSIYRDSAVKDTKALH 77

Query: 74  FLYQAVDEIIFEKISRVERAKEVWDLLQRSYKGDE--KEKKMMNQRAAVGSIEQAFQSKL 131
            L   + + +F K      AK +WDL++  Y   +   EK       A+  +   F   +
Sbjct: 78  LLQSFLPDSVFRKTLETTSAKHLWDLVKEDYVQAKLGMEKLPEYHMFAINVLPATFDKDI 137

Query: 132 TLLEKG 137
           TL+ KG
Sbjct: 138 TLMAKG 143

Top