BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000077.1_g0440.1
(117 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 54 2e-09
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 54 2e-09
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 50 2e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 54.3 bits (129), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 44 QRLQELSQKTDILLLEDNEPSTYNQAMTSPGSEKWLKAMRSEMDSMSENQVWDLIDLPDG 103
+++ L + + + EPSTYN+A W AM E+ +M W++ LP
Sbjct: 67 EKVSPLYHSFLVCIAKAKEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPN 123
Query: 104 ATPIGCKWVFKVK 116
PIGCKWV+K+K
Sbjct: 124 KKPIGCKWVYKIK 136
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 54.3 bits (129), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 44 QRLQELSQKTDILLLEDNEPSTYNQAMTSPGSEKWLKAMRSEMDSMSENQVWDLIDLPDG 103
+++ L + + + EPSTYN+A W AM E+ +M W++ LP
Sbjct: 67 EKVSPLYHSFLVCIAKAKEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPN 123
Query: 104 ATPIGCKWVFKVK 116
PIGCKWV+K+K
Sbjct: 124 KKPIGCKWVYKIK 136
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 50.1 bits (118), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 62 EPSTYNQAMTSPGSEKWLKAMRSEMDSMSENQVWDLIDLPDGATPIGCKWVFKVK 116
EP + A+ PG W +AM+ E+D++S N+ W L+ P +GCKWVFK K
Sbjct: 27 EPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTK 78