BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0030.1
(1023 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01395.1 | conserved oligomeric Golgi complex subunit 4 | Chr... 174 6e-45
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 95 9e-20
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 92 5e-19
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 92 5e-19
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 93 7e-19
>AT4G01395.1 | conserved oligomeric Golgi complex subunit 4 |
Chr4:573098-575648 REVERSE LENGTH=738 | 201606
Length = 738
Score = 174 bits (442), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 104/127 (81%)
Query: 838 SSVNFGSTEALEHVRNLMDVGAMTRLLHEYIAYQRGIDVQLENLLSQRTDLAKTLINLQK 897
S+V FG+ EALE+VR+L DVGAMTRLLHE IAYQR +D L+ LLSQRT+L + L+ LQ+
Sbjct: 17 STVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLDTLLSQRTELDRNLVQLQR 76
Query: 898 SEEVLAIVKADSDYMLTNVRSTCDLVVQVSGKVRELDLVQSCVQSTLSIIDAIVERGNYI 957
S E+L IVKAD+D+ML NVRSTCDL QVSGKVRELDL QS V TLS IDAIVERGN I
Sbjct: 77 SAEILDIVKADADHMLGNVRSTCDLADQVSGKVRELDLAQSRVNVTLSRIDAIVERGNCI 136
Query: 958 DGVQKAL 964
+GV+ AL
Sbjct: 137 EGVKTAL 143
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 25/347 (7%)
Query: 257 KKLHFINWQTICSSKENGGLGIRSLEEVNDSLIAKMRWRFLSEPTQKWVPLLQSKYIKSG 316
K +H+ W + K GG+G + +E N +L+ K WR LS P + +S+Y
Sbjct: 37 KGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKS 96
Query: 317 TFWSIDIPYHSTP--FWKAILHSRDLIWNNIIWSIGDGNTVNIVSDPWLLDMPNKTPIPI 374
++ P S P WK+I S++++ +G+G + I WL P + +
Sbjct: 97 D--PLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRM 154
Query: 375 QDLP-------SNIQKVRHLRNIDNTDWDYNILHTYFDSNSINAIKSVYFDHTVHHDKLI 427
Q +P S+I KV L + +W +++ F I + D
Sbjct: 155 QRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYT 214
Query: 428 WTPTDHGRFTSKSCYHQL------RNRPNLSNNINDFP-WSKLWKNPNMNPRIQQFIWKI 480
W T G +T KS Y L R+ P + + P + K+WK+ +P+IQ F+WK
Sbjct: 215 WDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKS-QTSPKIQHFLWKC 273
Query: 481 IHNGIATLGNIGKYNQSVIPFCKLCSNNEIETIMHLFGSCPKFK-DFIIFTNNNKLLSLS 539
+ N + G + + S C C + + ET+ HL C + + I + L
Sbjct: 274 LSNSLPVAGALAYRHLSKESACIRCPSCK-ETVNHLLFKCTFARLTWAISSIPIPLGGEW 332
Query: 540 EDPISNMKKILSNEGSRSLDW----ILYTHLIWVWWKARNDMIFNSK 582
D I + N G+ + W L L+W WK RN+++F +
Sbjct: 333 ADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGR 379
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 169/456 (37%), Gaps = 82/456 (17%)
Query: 142 ISHLLFADDLILFGKANTTQLNIIMEILDTYSNFSGQRVNFNKSSIYFGKRVPSTVRSQF 201
I+HL FADDL++F + + I++I +++FSG +++ KS+IY V ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 202 ISSLQAPIMTNQAKYLGSFLLKPGNIIDSFSWLTEKFKNTLSDWKSKLTSQAAS------ 255
+ S +YLG LL + L EK + + W ++ S A
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 256 -------------------------------------EKKLHFINWQTICSSKENGGLGI 278
K + W +C+ K+ GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 279 RSLEEVNDSLIAKMRWRFLSEPTQKWVPLLQSKYIKSGTFWSIDI-PYHSTPFWKAILHS 337
RSL+E N + K+ WR LS T WV L+ ++ G+FWSI + WK IL
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 338 RDLIWNNIIWSIGDGNTVNIVSDPW--------------LLDMPNKTPIPIQDLPSNIQK 383
R L + I +G+ + D W +DM + + N +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 384 VRHLRN--IDNTDWDYNILHTYFDSNSINAIKSVYFDHTVHHDKLIWTPTDHGRFTSKSC 441
RH + + D + H S D I+ P F +K
Sbjct: 306 RRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD--------IFKPC----FNTKET 353
Query: 442 YHQLRNRPNLSNNINDFPWSKLWKNPNMNPRIQQFIWKIIHNGIATLGNIGKYNQSVIPF 501
+ R P L N W K + P+ W I N + T + +N
Sbjct: 354 WAATRE-PKLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 502 CKLCSNNEIETIMHLFGSCPKFKDFIIFTNNNKLLS 537
C LC ++ +ET HLF +CP + + T KLLS
Sbjct: 408 CVLC-HHLVETRDHLFFTCP-YSAEVWSTLTRKLLS 441
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 169/456 (37%), Gaps = 82/456 (17%)
Query: 142 ISHLLFADDLILFGKANTTQLNIIMEILDTYSNFSGQRVNFNKSSIYFGKRVPSTVRSQF 201
I+HL FADDL++F + + I++I +++FSG +++ KS+IY V ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 202 ISSLQAPIMTNQAKYLGSFLLKPGNIIDSFSWLTEKFKNTLSDWKSKLTSQAAS------ 255
+ S +YLG LL + L EK + + W ++ S A
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 256 -------------------------------------EKKLHFINWQTICSSKENGGLGI 278
K + W +C+ K+ GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 279 RSLEEVNDSLIAKMRWRFLSEPTQKWVPLLQSKYIKSGTFWSIDI-PYHSTPFWKAILHS 337
RSL+E N + K+ WR LS T WV L+ ++ G+FWSI + WK IL
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 338 RDLIWNNIIWSIGDGNTVNIVSDPW--------------LLDMPNKTPIPIQDLPSNIQK 383
R L + I +G+ + D W +DM + + N +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 384 VRHLRN--IDNTDWDYNILHTYFDSNSINAIKSVYFDHTVHHDKLIWTPTDHGRFTSKSC 441
RH + + D + H S D I+ P F +K
Sbjct: 306 RRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD--------IFKPC----FNTKET 353
Query: 442 YHQLRNRPNLSNNINDFPWSKLWKNPNMNPRIQQFIWKIIHNGIATLGNIGKYNQSVIPF 501
+ R P L N W K + P+ W I N + T + +N
Sbjct: 354 WAATRE-PKLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 502 CKLCSNNEIETIMHLFGSCPKFKDFIIFTNNNKLLS 537
C LC ++ +ET HLF +CP + + T KLLS
Sbjct: 408 CVLC-HHLVETRDHLFFTCP-YSAEVWSTLTRKLLS 441
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 105/442 (23%), Positives = 165/442 (37%), Gaps = 85/442 (19%)
Query: 142 ISHLLFADDLILFGKANTTQLNIIMEILDTYSNFSGQRVNFNKSSIYFGKRVPSTVRSQF 201
I+HL FADDL++F + + I++I +++FSG +++ KS+IY V ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 202 ISSLQAPIMTNQAKYLGSFLLKPGNIIDSFSWLTEKFKNTLSDWKSKLTSQAAS------ 255
+ S +YLG LL + L EK + + W ++ S A
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 256 -------------------------------------EKKLHFINWQTICSSKENGGLGI 278
K + W +C+ K+ GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 279 RSLEEVNDSLIAKMRWRFLSEPTQKWVPLLQSKYIKSGTFWSIDI-PYHSTPFWKAILHS 337
RSL+E N + K+ WR LS T WV L+ ++ G+FWSI + WK IL
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 338 RDLIWNNIIWSIGDGNTVNIVSDPW--------------LLDMPNKTPIPIQDLPSNIQK 383
R L + I +G+ + D W +DM + + N +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 384 VRHLRN--IDNTDWDYNILHTYFDSNSINAIKSVYFDHTVH--HDKLIWTPTDHGRFTSK 439
RH + + D + H S + TV + I+ P F +K
Sbjct: 306 RRHRHDTLLRIEDVIAEVRHQGLTSG----------EDTVRWKGNGDIFKPC----FNTK 351
Query: 440 SCYHQLRNRPNLSNNINDFPWSKLWKNPNMNPRIQQFIWKIIHNGIATLGNIGKYNQSVI 499
+ R P L N W K + P+ W I N + T + +N
Sbjct: 352 ETWAATRE-PKLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405
Query: 500 PFCKLCSNNEIETIMHLFGSCP 521
C LC ++ +ET HLF +CP
Sbjct: 406 SSCVLC-HHLVETRDHLFFTCP 426