BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0050.1
(145 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 55 2e-09
AT5G42905.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 3e-07
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 47 2e-06
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 11 WMPPPRSKVKINVDGAY--KPPSAAAGAIARDSEGVILGTKSSRFPAIS-ALHSEMRSFD 67
W PP + +K N DGA+ + +A AG + RD GV +G+ + S +L SE ++
Sbjct: 186 WQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALI 245
Query: 68 LGLDLMEELGEGSYILEGDSKIMVDLLSEGSQEIPWRMLGAIRSLNTRVSQARVD---LQ 124
+ + G I EGDSK + +L++ ++++ + IR R Q R + +
Sbjct: 246 IAMQHAWSQGYRKVIFEGDSKQVEELMN--NEKLNFGRFNWIRE--GRFWQKRFEEAVFK 301
Query: 125 FCPRHSNVEAHKLAQLAIQP 144
+ PR +N A LA+ +QP
Sbjct: 302 WVPRTNNQPADILAKHHLQP 321
>AT5G42905.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:17201414-17202323 REVERSE
LENGTH=258 | 201606
Length = 258
Score = 48.5 bits (114), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 11 WMPPPRSKVKINVDGAYK--PPSAAAGAIARDSEGVILGTKSSRFPAISALHSEMRSFDL 68
W+ P VK+N DGA + P A+AG + RD EG G S SA H+E+
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 69 GLDLMEELGEGSYILEGDSKIMVDLLSEG 97
GL E LE DS+ +V L G
Sbjct: 200 GLYFAWEKKVPRVELEVDSEAIVGFLKTG 228
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 11 WMPPPRSKVKINVDGAYKPPS--AAAGAIARDSEGVILGTKSSRFPAI-SALHSEMRSFD 67
W PPP VK N D + + G + R+ +G + + P + S L +E+ +
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 68 LGLDLMEELGEGSYILEGDSKIMVDLLSEGSQEIPWRMLGAIRSLNTRVSQ-ARVDLQFC 126
+ + I E DS++++++L+ + EI + I+ L +SQ V F
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILN--NDEIWPSLKPTIQDLQRLLSQFTEVKFVFI 537
Query: 127 PRHSNVEAHKLAQ 139
PR N A ++A+
Sbjct: 538 PREGNTLAERVAR 550