BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0070.1
(178 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 103 4e-28
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 107 3e-27
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 107 3e-27
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 103 bits (257), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 74 PSNLQEALSDPRWKKAMNEEMNALPKNSTWELVDKPHGYRIVGCRWIFTVKTNPDGSVDR 133
P ++ AL DP W +AM EE++AL +N TW LV P I+GC+W+F K + DG++DR
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 134 YKARLVSKGYTQTYGVDYEETFAPVAKINTIRVLISLA 171
KARLV+KG+ Q G+ + ET++PV + TIR ++++A
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 107 bits (268), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 87/143 (60%)
Query: 36 YEPDINSKAKYPISDYVSTNRLSKSFTCTMNQLSSVSIPSNLQEALSDPRWKKAMNEEMN 95
Y + S + IS ++S ++S + + ++ PS EA W AM++E+
Sbjct: 48 YCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIG 107
Query: 96 ALPKNSTWELVDKPHGYRIVGCRWIFTVKTNPDGSVDRYKARLVSKGYTQTYGVDYEETF 155
A+ TWE+ P + +GC+W++ +K N DG+++RYKARLV+KGYTQ G+D+ ETF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167
Query: 156 APVAKINTIRVLISLAANQGWPL 178
+PV K+ +++++++++A + L
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTL 190
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 107 bits (268), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 87/143 (60%)
Query: 36 YEPDINSKAKYPISDYVSTNRLSKSFTCTMNQLSSVSIPSNLQEALSDPRWKKAMNEEMN 95
Y + S + IS ++S ++S + + ++ PS EA W AM++E+
Sbjct: 48 YCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIG 107
Query: 96 ALPKNSTWELVDKPHGYRIVGCRWIFTVKTNPDGSVDRYKARLVSKGYTQTYGVDYEETF 155
A+ TWE+ P + +GC+W++ +K N DG+++RYKARLV+KGYTQ G+D+ ETF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167
Query: 156 APVAKINTIRVLISLAANQGWPL 178
+PV K+ +++++++++A + L
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTL 190