BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0150.1
(249 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 63 2e-12
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 59 9e-10
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 59 9e-10
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 57 4e-09
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 62.8 bits (151), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 42 LINGRPGCTFNVSRGIRQGDPLSPFLFAIAMEGLSRLLEKNRNDFSFIGFLISHSNFSIK 101
+ING P SRG+RQGDPLSP+LF + E LS L + + G +S+++ I
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 102 HLLFADDCIIFGQNSLENIFNLKQILKEFSEA----SGQMINYAKSNIFF 147
HLLFADD +S I QI F + G +N+ SN++F
Sbjct: 73 HLLFADD-----TSSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYF 117
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 100 IKHLLFADDCIIFGQNSLENIFNLKQILKEFSEASGQMINYAKSNIFFSKNSHPKFKRMI 159
I HL FADD ++F +I + QI +F++ SG I+ KS I+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 160 IRELKVHQSSSGDKYLGTKLFIDHNKKQAFNSLLTQIKNKLAKWQTHLLSQAGSV-VLST 218
+ + +YLG L + L+ +I+ ++ KW LS AG + ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 219 IAAAVPRYQMQCFAHPKGISDSIESIQRTF 248
+ ++ + M F P I+SI +F
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSF 156
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 100 IKHLLFADDCIIFGQNSLENIFNLKQILKEFSEASGQMINYAKSNIFFSKNSHPKFKRMI 159
I HL FADD ++F +I + QI +F++ SG I+ KS I+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 160 IRELKVHQSSSGDKYLGTKLFIDHNKKQAFNSLLTQIKNKLAKWQTHLLSQAGSV-VLST 218
+ + +YLG L + L+ +I+ ++ KW LS AG + ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 219 IAAAVPRYQMQCFAHPKGISDSIESIQRTF 248
+ ++ + M F P I+SI +F
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSF 156
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 100 IKHLLFADDCIIFGQNSLENIFNLKQILKEFSEASGQMINYAKSNIFFSKNSHPKFKRMI 159
I HL FADD ++F +I + QI +F++ SG I+ KS I+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 160 IRELKVHQSSSGDKYLGTKLFIDHNKKQAFNSLLTQIKNKLAKWQTHLLSQAGSV-VLST 218
+ + +YLG L + L+ +I+ ++ KW LS AG + ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 219 IAAAVPRYQMQCFAHPKGISDSIESIQRTF 248
+ ++ + M F P I+SI +F
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSF 156