BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0160.1
(160 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 54 1e-08
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 1e-07
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 50 1e-07
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 2e-07
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 53.5 bits (127), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 7 NTTTTPLKTESSITTKCKEKTNIQTWRPPSTPYIKINVDASFVSLNEPAGIGCIIRDAEA 66
N TP S TT +++I WR P+ ++K NVD SF++ N P G I+RD
Sbjct: 481 NEAVTPSHINSHGTTI---RSHIPNWRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNG 537
Query: 67 NYIIAAADTVRG-KHAEECESLAILSSLLWAIQLQISYVHLESDNQALILSLSG---NGG 122
Y A +A ECE A+L ++ + E DN+ + ++G + G
Sbjct: 538 RYEFAGQAIGNCIDNALECEFQALLMAMQHCWSKGYRRICFEGDNKEMFDLINGLKMHFG 597
Query: 123 SLHW 126
+ +W
Sbjct: 598 AFNW 601
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 32 WRPPSTPYIKINVDASFVSLNEPAGIGCIIRDAEANYIIAAADTVRGKHAEECESLAILS 91
W PP +K N DAS N +G+G I+R+++ I +G+ E A S
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTE---EAECS 161
Query: 92 SLLWAIQLQISYVH----LESDNQAL 113
+L+WAIQ + H E DNQ +
Sbjct: 162 TLIWAIQASYGFGHKKVIFEGDNQTI 187
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 50.4 bits (119), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 14 KTESSITTKCKEKTNIQTWRPPSTPYIKINVDASFVSLNEPAGIGCIIRDAEANYIIAAA 73
+ ES T +++ WRPP ++K N DA++ NE GIG ++R+ + A
Sbjct: 402 EAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGA 461
Query: 74 DTV-RGKHAEECESLAILSSLLWAI----QLQISYVHLESDNQALI 114
+ + K E E L ++ WA+ + Q +YV ESD+Q LI
Sbjct: 462 RALPKLKSVLEAE----LEAMRWAVLSLSRFQYNYVIFESDSQVLI 503
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 48.9 bits (115), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 11 TPLKTESSITTK---CKEKTNIQTWRPPSTPYIKINVDASFVSLNEPAGIGCIIRDAEAN 67
T T + I T+ +E+ N WR P +IK N D SFV+ + + G ++RD+ +
Sbjct: 28 TEANTVAQINTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGS 87
Query: 68 YIIAAADTVRG-KHAEECESLAILSSLLWAIQLQISYVHLESDNQALILSLSG 119
Y++A R +A E E A++ S+ V E DN+ L ++G
Sbjct: 88 YLLAGQAIGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDNKMLFDLING 140