BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0210.1
(360 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 103 8e-25
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 103 8e-24
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 93 2e-21
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 90 1e-19
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 87 2e-18
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 103 bits (257), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 128/266 (48%), Gaps = 33/266 (12%)
Query: 72 SKIWKLNQVEPKVLIFLWRLMNEGLPLKNSIRKGYPHRDSRCVLCETDEETSTHLFYSCP 131
+KIWKL + PK+ FLW+L++ L +++++ + +C C ++ETS HLF+ C
Sbjct: 16 AKIWKL-KTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDC- 73
Query: 132 KFKELCALATRFQTPPPHS----------NEKQFIQELVKDNKNEKRSVFYFYLLWEYWK 181
A + PH + + + N+ + ++LW WK
Sbjct: 74 ----FYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWK 129
Query: 182 GRNDMVFRHKTIDLNHIVHLARRKARDLTNI------------SSLHQDQADLPSVWSPP 229
RN +VF+ K+I + + AR ++ + SS HQ + W P
Sbjct: 130 SRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRP 189
Query: 230 PENKLKINYDGAY--KETKAAVGIIVRNHQEEIIRRKGKSIISGS--AMESELRALIFAL 285
P +K NYDGA+ + A G ++R+ + + G++I S + ++ESE +ALI A+
Sbjct: 190 PSTWIKYNYDGAFNHQTRNAKAGWLMRD-ENGVYMGSGQAIGSTTSDSLESEFQALIIAM 248
Query: 286 KIGKTLGQRDIIYEGDNQLITRVISD 311
+ + G R +I+EGD++ + ++++
Sbjct: 249 QHAWSQGYRKVIFEGDSKQVEELMNN 274
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 103 bits (256), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 157/352 (44%), Gaps = 37/352 (10%)
Query: 35 DKLIWTPQIKGIFTAKSYY---RGIITGESS----QRASHDFPWSKIWKLNQVEPKVLIF 87
D W G +T KS Y II SS S + + KIWK +Q PK+ F
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWK-SQTSPKIQHF 269
Query: 88 LWRLMNEGLPLKNSIRKGYPHRDSRCVLCETDEETSTHLFYSCPKFKELCALATRFQTPP 147
LW+ ++ LP+ ++ + ++S C+ C + +ET HL + C + A+++ P
Sbjct: 270 LWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISS---IPI 326
Query: 148 PHSNEKQ--------FIQELVKDNKN-EKRSVFYFYLLWEYWKGRNDMVFRHKTIDLNHI 198
P E ++ L N EK S +LLW WK RN++VFR + + +
Sbjct: 327 PLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEV 386
Query: 199 VHLARRKARDLTN--ISSLHQDQADLPSV-------WSPPPENKLKINYDGAYKE--TKA 247
+ RR DL I + + P V W PPP +K N D + +
Sbjct: 387 L---RRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERC 443
Query: 248 AVGIIVRNHQEEIIRRKGKSIIS-GSAMESELRALIFALKIGKTLGQRDIIYEGDNQLIT 306
+G ++RN + E+ +++ S +E+EL A+ +A+ +I+E D+Q++
Sbjct: 444 GIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLI 503
Query: 307 RVISDGQEEPPWRIRSSVMVARELFKAQPNNRLVYCHREANSEAHLTAQDHM 358
++++ + P ++ ++ + L + V+ RE N+ A A++ +
Sbjct: 504 EILNNDEIWP--SLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVARESL 553
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 92.8 bits (229), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 148 PHSNEKQFIQELVKDNKNEKRSVFY-FYLLWEYWKGRNDMVFRHKTIDLNHIVHLARRKA 206
P + + I ++ D++ ++ + F F+L+W WK ND+VF H V +A
Sbjct: 19 PPEEKLRIIFQMHNDSRVDRVTRFMPFWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDT 78
Query: 207 RD-----LTNISSLHQDQADLPS---VWSPPPENKLKINYDGAYKE--TKAAVGIIVRNH 256
++ +TN AD PS WSPP +KLK NYD ++ E T + +G I+RN
Sbjct: 79 KEWLDNTMTNEQQNGNRNAD-PSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNS 137
Query: 257 QEEIIR-RKGKSIISGSAMESELRALIFALKIGKTLGQRDIIYEGDNQLITRVISDGQEE 315
Q +I GK + E+E LI+A++ G + +I+EGDNQ ITR+I+
Sbjct: 138 QGTVIECGMGKFQGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSN 197
Query: 316 PPWRIRSSVMVARELFKAQPNNRLVYCHREANSEAHLTAQ 355
P R++ + + + + + HRE N A A+
Sbjct: 198 P--RLQHFLDTIQSWIPSFESIEFSFKHREQNGCADFLAK 235
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 131/309 (42%), Gaps = 29/309 (9%)
Query: 74 IWKLNQVEPKVLIFLWRLMNEGLPLKNSIRKGYPHRDSRCVLCETDEETSTHLFYSCPKF 133
IWKL+ V PK+ FLWR + L +R D C C +EET H+ ++CP
Sbjct: 37 IWKLH-VAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYT 95
Query: 134 KELCALATRF---QTPPPHS---NEKQFIQELVKDNKNEKRSVFYFYLLWEYWKGRNDMV 187
+ + A Q PP S N + IQ N F+++W WK RN +
Sbjct: 96 QSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFL 155
Query: 188 FRHKTIDLNHIVHLARRKARDLTNISSLHQDQ----ADLP--------SVWSPPPENKLK 235
F+ K ++ + A + N + ++ A P S W+PPPE +K
Sbjct: 156 FQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVK 215
Query: 236 INYDGAYKETKAAV--GIIVRNHQEEIIRRKGKSIISGS-AMESELRALIFALKIGKTLG 292
N+D Y + G +R I+ + S + ++ +E + AL++ G
Sbjct: 216 CNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHG 275
Query: 293 QRDIIYEGDNQLITRVISDGQEEPPWRIRSSVMVARELFKAQPNNRLVYCHREANSEA-- 350
R + +E D++ + +I++G++ + + + R P L + +RE NS A
Sbjct: 276 LRYVWFESDSKSLVTLINNGEDHS--LLGTLIYDIRHWMLKLPYCSLEFVNRERNSAADA 333
Query: 351 ---HLTAQD 356
H+ A+D
Sbjct: 334 LASHVHARD 342
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 136/327 (41%), Gaps = 23/327 (7%)
Query: 6 WNIGLINNYFDKDSTEEILKIKIDPLLPEDKLIWTPQIKGIFTAKSYYRGIITGESSQRA 65
W+ I+ + D+ I +I + DK+IW G +T +S Y + S+
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 66 SHDFPW------SKIWKLNQVEPKVLIFLWRLMNEGLPLKNSIRKGYPHRDSRCVLCETD 119
+ + P ++IW L + PK+ FLWR +++ L + D C C +
Sbjct: 148 AINPPHGSIDLKTRIWNL-PIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRE 206
Query: 120 EETSTHLFYSCP------KFKELCALATRFQTPPPHSNEKQFIQELVKDNKNEKRSVFYF 173
E+ H ++CP + + + + + N + + ++ +
Sbjct: 207 NESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPV 266
Query: 174 YLLWEYWKGRNDMVFRHKTIDLNHIVHLARRKARDLTNISSLHQDQ-------ADLPSVW 226
+L+W WK RN++VF + V A+ + D N + H+ A+ W
Sbjct: 267 WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEW 326
Query: 227 SPPPENKLKINYDGAY--KETKAAVGIIVRNHQEEIIRRKGKSII-SGSAMESELRALIF 283
PP +K N+D + ++ +A G I+RNH I + + + +E+E +AL+
Sbjct: 327 RNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLA 386
Query: 284 ALKIGKTLGQRDIIYEGDNQLITRVIS 310
AL+ G + EGD Q + +I+
Sbjct: 387 ALQQTWIRGYTQVFMEGDCQTLINLIN 413