BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0430.1
(438 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 97 2e-21
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 59 3e-09
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 54 8e-08
AT3G26855.1 | RNA-directed DNA polymerase (reverse transcriptase... 51 2e-07
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 47 4e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 44/312 (14%)
Query: 45 NQAFIGKLAWKLINKPQVLWVKILKAKYF----PTNQKPVPPKANHSWLWKSLYKHYTQI 100
N A +GK W+++++P+ L K+ K++YF P N P + S++WKS++ +
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLN---APLGSRPSFVWKSIHASQEIL 121
Query: 101 SSLFFWDINQGTNINIWHDYWLPDHP----------PPIHNSRNVGINQVARLINQN--T 148
+ G +I IW WL P PP + I +V+ LI+++
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 149 WNTHLVNQCFNSDIANAILSINLQVHK-EDEAKWSLTKSGNYTISSMYYHLRTTGNHNNT 207
W ++ F I + + D W T SG+YT+ S Y+ L N ++
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 208 DR--------VDWNFIWNINTTPRIKLFLWKCCTTSLPVRGKIG-KFIGQH---YNCPYC 255
+ + IW T+P+I+ FLWKC + SLPV G + + + + CP C
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301
Query: 256 AETESHSHALLHCPFVRTIWFYYNII-------TDAVTDVKEWILSWKDLD---ENMSSL 305
ET +H L C F R W +I D++ W+ + + + E S L
Sbjct: 302 KET--VNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL 359
Query: 306 YAKIMWLLWKVR 317
++W LWK R
Sbjct: 360 VPWLLWRLWKNR 371
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 39/280 (13%)
Query: 68 LKAKYFP-TNQKPVPPKANHSWLWKSLYKHYTQISSLFFWDINQGTNINIWHDYWLPDHP 126
+KA+YF + + S+ W SL + I G NI I D + HP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 127 PPIHNS----RNVGINQV-ARLINQNTWNTHLVNQCFNSDIANAILSINL-QVHKEDEAK 180
P N+ + + IN + R + W+ ++Q + I I L + K D+
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 181 WSLTKSGNYTISSMYYHLRTTGN---------HNNTDRVDWNFIWNINTTPRIKLFLWKC 231
W+ +G YT+ S Y+ L + H + D IWN+ P++K FLW+
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK--TRIWNLPIMPKLKHFLWRA 178
Query: 232 CTTSLPVRGKI-GKFIGQHYNCPYC-AETESHSHALLHCPFVRTIWFYYNIITDAVTDVK 289
+ +L ++ + + +CP C E ES +HAL CPF W ++D+ + ++
Sbjct: 179 LSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW----RLSDS-SLIR 233
Query: 290 EWILSWKDLDENMSSL-----------YAKIM--WLLWKV 316
++S D +EN+S++ + K++ WL+W++
Sbjct: 234 NQLMS-NDFEENISNILNFVQDTTMSDFHKLLPVWLIWRI 272
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 222 PRIKLFLWKCCTTSLPVRGK-IGKFIGQHYNCPYCAETESHSHALLHCPFVRTIWFYYNI 280
P+IKLFLWK +LPV + + + I ++C C E+ +H L HC F +W +
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 281 ----------ITDAVTDVKEWILSWKDLDENMSSLYAKIMWLLWKVR 317
I +A+ +K+ I+ + + ++L+ I W +WK R
Sbjct: 62 QLGHIPIGTPILEALNLLKKTIV-LPPVGIHTATLFPWICWHIWKAR 107
>AT3G26855.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9898680-9899350 REVERSE LENGTH=163 | 201606
Length = 163
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 215 IWNINTTPRIKLFLWKCCTTSLPVRGK-IGKFIGQHYNCPYCAETESHSHALLHCPFVRT 273
IW++ +P+IKL +WK +LPV + + + I C C + E+ +H L +CPF +
Sbjct: 9 IWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNCPFAQ- 67
Query: 274 IWFYYNIITDAVTDVKEW 291
+I ++ D KEW
Sbjct: 68 ----REVIMKSIIDAKEW 81
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 37 SFRLPNLDNQAFIGKLAWKLINKPQVLWVKILKAKYFP-TNQKPVPPKANHSWLWKSLYK 95
FR NQA + K ++++I++P L ++L+++YFP ++ S+ W+S+
Sbjct: 58 GFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIH 117
Query: 96 HYTQISSLFFWDINQGTNINIWHDYWLPDHPP 127
+S I G + +W D W+ D P
Sbjct: 118 GRELLSRGLLRTIGDGIHTKVWLDRWIMDETP 149