BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0530.1
(297 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 62 2e-10
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 58 3e-09
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 55 2e-08
AT2G13980.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 2e-07
AT1G04625.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 5e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 162 WVPPPPGLLKINTDGAFK--DERGSTAAVIRDNKGDV-LFSVSEISISSSPLQSELHGFR 218
W PPP +K NTD + +ER V+R+ KG+V + S L++EL R
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 219 LGLRAAEELGVNEFILETDSRVLVHYFLDQDPTVPWRLISHLEDIKRQAS-FLNIQYSYC 277
+ + N I E+DS+VL+ L+ D P L ++D++R S F +++ +
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIE-ILNNDEIWP-SLKPTIQDLQRLLSQFTEVKFVFI 537
Query: 278 PREANKVAHDLASQAFHQL 296
PRE N +A +A ++ L
Sbjct: 538 PREGNTLAERVARESLSFL 556
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 156 VQTEVEWVPPPPGLLKINTDGAFKDER--GSTAAVIRDNKGD-VLFSVSEISISSSPLQS 212
+ ++EW PP +K N D F ++ + +IR++ G + + +++ +S+PL++
Sbjct: 320 AENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEA 379
Query: 213 ELHGFRLGLRAAEELGVNEFILETDSRVLVHYFLDQDPTVPWRLISHLEDIKRQAS-FLN 271
E L+ G + +E D + L++ L + L +HLEDI A+ F +
Sbjct: 380 ETKALLAALQQTWIRGYTQVFMEGDCQTLIN--LINGISFHSSLANHLEDISFWANKFAS 437
Query: 272 IQYSYCPREANKVAHDLA 289
IQ+ + R+ NK+AH LA
Sbjct: 438 IQFGFIRRKGNKLAHVLA 455
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 160 VEWVPPPPGLLKINTDGAFKDE--RGSTAAVIRDNKGDVLF-SVSEISISSSPLQSELHG 216
V+W PP +K NTD ++ E R ++R+ G VL+ + + + L++EL
Sbjct: 135 VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA 194
Query: 217 FRLGLRAAEELGVNEFILETDSRVLVHYFLDQDPTVPWRLISHLEDIKRQA-SFLNIQYS 275
R + I E+D++ LV+ L+ D P L LEDI++ F +++
Sbjct: 195 LRWAVLTMSRFNYKRIIFESDAQALVN-LLNSDDFWP-TLQPALEDIQQLLHHFEEVKFE 252
Query: 276 YCPREANKVAHDLASQA 292
+ PR NKVA +A ++
Sbjct: 253 FTPRGGNKVADRIARES 269
>AT2G13980.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:5869853-5870368 REVERSE
LENGTH=171 | 201606
Length = 171
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 156 VQTEVEWVPPPPGLLKINTDGAFKDERGSTAA--VIRDNKGDVLFSVS-EISISSSPLQS 212
V +W PP +K N D F + + A +IR++ G S ++ +S+PL++
Sbjct: 7 VVHNTKWKAPPDTHIKCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEA 66
Query: 213 ELHGFRLGLRAAEELGVNEFILETDSRVLVHYFLDQDPTVPWRLISHLEDIKRQAS-FLN 271
E L+ G I+E D L + L + L + L+DI+ A F N
Sbjct: 67 ETKALLAALQQTWIRGYLRVIMEGDCETLTN--LVSGSSSHNHLANLLDDIRIWAKKFSN 124
Query: 272 IQYSYCPREANKVAHDLA 289
+Q+S+ R NKVAH+LA
Sbjct: 125 VQFSFVRRGGNKVAHELA 142
>AT1G04625.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:1287831-1289820 REVERSE
LENGTH=257 | 201606
Length = 257
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 162 WVPPPPGLLKINTDGAFKDERGSTAA-VIRDNKGDVLFSVSEI-SISSSPLQSELHGFRL 219
W PP G K N DG + S A ++RD++G L + I SI+++P++SEL +
Sbjct: 82 WTTPPIGWTKCNYDGTYHSNAPSKAGWLLRDDRGTFLGAAHAIGSITTNPMESELQALVM 141
Query: 220 GLRAAEELGVNEFILETDSRVLVHYFLDQDPTVPWRLISHLEDIKR-QASFLNIQYSYCP 278
++ G + E D++ + + + + + DI ++ F ++++
Sbjct: 142 AMQHCWSRGYRKIYFEGDNKEVSEIVNGRSSNFA--VFNWIRDISAWRSKFEECKFTWTR 199
Query: 279 REANKVAHDLASQAFHQLP 297
R +N A LA Q QLP
Sbjct: 200 RFSNMAADALAKQ---QLP 215