BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0540.1
(242 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 6e-12
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 59 1e-09
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 59 1e-09
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 57 3e-09
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 61.6 bits (148), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 45 INGQLHGDFTSSR--RQGCPLSPYLFILSSQALSHLINLYESHNRFVGYKINRACPSITH 102
ING G T SR RQG PLSPYLFIL ++ LS L + R G +++ P I H
Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73
Query: 103 LLFVDDLILFGNTTNQNLNAIKVVMQEYSN-------FSGQLVNYDKSSLFFSSGVP 152
LLF DD + I + Q + F G VN+ S+L+F +P
Sbjct: 74 LLFADD--------TSSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYFLGSLP 122
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 100 ITHLLFVDDLILFGNTTNQNLNAIKVVMQEYSNFSGQLVNYDKSSLFFSSGVPTGTRDEF 159
ITHL F DDL++F + ++ I + ++++FSG ++ +KS+++ +GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 160 SIELQAPTMTDDAKYLGSLLLKPGNRIRNYTWLIEKYEKTLTGWKQKFISQAGRTVMIKS 219
+ +YLG LL +Y L+EK + W + +S AGR +I S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 VLNSYRTYPFS 230
V++S + S
Sbjct: 127 VIHSLTNFWMS 137
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 100 ITHLLFVDDLILFGNTTNQNLNAIKVVMQEYSNFSGQLVNYDKSSLFFSSGVPTGTRDEF 159
ITHL F DDL++F + ++ I + ++++FSG ++ +KS+++ +GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 160 SIELQAPTMTDDAKYLGSLLLKPGNRIRNYTWLIEKYEKTLTGWKQKFISQAGRTVMIKS 219
+ +YLG LL +Y L+EK + W + +S AGR +I S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 VLNSYRTYPFS 230
V++S + S
Sbjct: 127 VIHSLTNFWMS 137
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 100 ITHLLFVDDLILFGNTTNQNLNAIKVVMQEYSNFSGQLVNYDKSSLFFSSGVPTGTRDEF 159
ITHL F DDL++F + ++ I + ++++FSG ++ +KS+++ +GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 160 SIELQAPTMTDDAKYLGSLLLKPGNRIRNYTWLIEKYEKTLTGWKQKFISQAGRTVMIKS 219
+ +YLG LL +Y L+EK + W + +S AGR +I S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 VLNSYRTYPFS 230
V++S + S
Sbjct: 127 VIHSLTNFWMS 137