BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0630.1
(317 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 94 4e-21
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 92 2e-20
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 89 3e-20
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 85 2e-18
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 75 2e-15
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 94.0 bits (232), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 41/305 (13%)
Query: 20 IWNIGTIPRIKIFLWKCCTNSLPVKDKIG-KYIGNNYNCVFCEE-RETMAHALLHCNLAR 77
IW T P+I+ FLWKC +NSLPV + +++ C+ C +ET+ H L C AR
Sbjct: 257 IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFAR 316
Query: 78 AVWFHFHVRTDEIPSVLDWIKC------W--------PSLEDNSMSLFGKIMWFLWKARC 123
W + + IP +W W P E S L ++W LWK R
Sbjct: 317 LTW---AISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKAS-QLVPWLLWRLWKNRN 372
Query: 124 DKCFGRTDSTPALVIRKIQTYVTSFQ--------ATHTTKQKASQQIWQPRPQDFLKLNV 175
+ F + V+R+ + + ++ T ++S W+P P ++K N
Sbjct: 373 ELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNT 432
Query: 176 DASFKTYTDPAGIGCIIHDPKGDFISAMAETVRGQTAEECESIALLRAVQWAKELAITR- 234
DA++ + GIG ++ + KG+ + M + E A L A++WA L+++R
Sbjct: 433 DATWNRDNERCGIGWVLRNEKGE-VKWMGARALPKLKSVLE--AELEAMRWAV-LSLSRF 488
Query: 235 ----LIVESDNNNLINHIHDSTTTINWQSQRH-MTHIKALCNNFVIIQFHYSPRKTNILA 289
+I ESD+ LI +++ W S + + ++ L + F ++F + PR+ N LA
Sbjct: 489 QYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLA 545
Query: 290 DSLAK 294
+ +A+
Sbjct: 546 ERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 40/307 (13%)
Query: 20 IWNIGTIPRIKIFLWKCCTNSLPVKDKIG-KYIGNNYNCVFC-EERETMAHALLHCNLAR 77
IWN+ +P++K FLW+ + +L +++ + + + +C C E E++ HAL C A
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 221
Query: 78 AVW-----------FHFHVRTDEIPSVLDWIKCWPSLEDNSMSLFGKIM-----WFLWKA 121
W + + I ++L+++ +D +MS F K++ W +WKA
Sbjct: 222 MAWRLSDSSLIRNQLMSNDFEENISNILNFV------QDTTMSDFHKLLPVWLIWRIWKA 275
Query: 122 RCDKCFGRTDSTPALVI--RKIQTY-----VTSFQATHT-TKQKASQQI-WQPRPQDFLK 172
R + F + +P+ + K +T+ S + T + T+Q A +I W+ P ++K
Sbjct: 276 RNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVK 335
Query: 173 LNVDASFKTYTDPAGIGCIIHDPKGDFIS-AMAETVRGQTAEECESIALLRAVQWAKELA 231
N DA F A G II + G IS + E E+ ALL A+Q
Sbjct: 336 CNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG 395
Query: 232 ITRLIVESDNNNLINHIHDSTTTINWQSQ--RHMTHIKALCNNFVIIQFHYSPRKTNILA 289
T++ +E D LIN I+ I++ S H+ I N F IQF + RK N LA
Sbjct: 396 YTQVFMEGDCQTLINLING----ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLA 451
Query: 290 DSLAKWG 296
LAK+G
Sbjct: 452 HVLAKYG 458
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 89.4 bits (220), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 27/290 (9%)
Query: 26 IPRIKIFLWKCCTNSLPVKDK-IGKYIGNNYNCVFCEERETMAHALLHCNLARAVWFHFH 84
+P+IK+FLWK +LPV + + ++I + ++C C ET H L HC+ A VW
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 85 VRTDEIP------SVLDWIK---CWPSLEDNSMSLFGKIMWFLWKARCDKCFGRTDSTPA 135
++ IP L+ +K P + ++ +LF I W +WKAR F + +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVI 120
Query: 136 LVIRKIQTYVTSFQATHTTKQKASQQIWQPRP-------QDFLKLNVDASFKTYTDPAGI 188
+ K ++Q+ K ++ PRP DFL VDA+++ + AG
Sbjct: 121 ETVTKAVQDALAWQSAQLALPKV--RVATPRPNSTTTLTHDFL-CYVDAAWQQQSSLAGS 177
Query: 189 GCII----HDPKGDFISAMAETVRGQTAEECESIALLRAVQWAKELAITRLIVESDNNNL 244
G + H K + + A R + E+ A+ A+ A +L + L+V SD+ ++
Sbjct: 178 GWVFQATSHSEK-EITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSI 236
Query: 245 INHIHDSTTTINWQSQRHMTHIKALCNNFVIIQFHYSPRKTNILADSLAK 294
++ + +S ++N + + I+++ N F I F + PR N +AD+ AK
Sbjct: 237 VDAL-NSNVSLN-EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 36/305 (11%)
Query: 20 IWNIGTIPRIKIFLWKCCTNSLPVKDKIG-KYIGNNYNC-VFCEERETMAHALLHCNLAR 77
IW + T P+IK FLWK + +L D + ++I N+ C C+E ET H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 78 AVWF-----HFHVRTD----EIPSVLDWIKCWPSLEDNSMSLFGKIMWFLWKARCDKCFG 128
VW H +RT E L C + + +L I+W LWK+R F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 129 RTDSTPALVIRKIQTYVTSFQATHTTKQKASQQI--------------WQPRPQDFLKLN 174
+ + +++ + V ++ T+T Q +QQ+ WQ P ++K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 175 VDASFKTYTDPAGIGCIIHDPKGDFISAMAETVRGQTAEECES--IALLRAVQWAKELAI 232
D +F T A G ++ D G ++ + + + T++ ES AL+ A+Q A
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVYMGS-GQAIGSTTSDSLESEFQALIIAMQHAWSQGY 256
Query: 233 TRLIVESDNNN---LINHIHDSTTTINWQSQRHMTHIKALCNNFVIIQFHYSPRKTNILA 289
++I E D+ L+N+ + NW + + F F + PR N A
Sbjct: 257 RKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQPA 311
Query: 290 DSLAK 294
D LAK
Sbjct: 312 DILAK 316
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 32/271 (11%)
Query: 49 KYIGNNYNCVFC-EERETMAHALLHCNLARAVWFHFHVR-------TDEIPSVLDWIKCW 100
+++ +CV C + RET+ H L C AR VW + TD + + L W+
Sbjct: 4 RHLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVL-- 61
Query: 101 PSLEDNSMSLFGKI-------MWFLWKARCDKCF-GRTDSTPALVIRKIQTYVTSFQATH 152
+LE L GKI +W LWK+R + F G+ P ++ R ++ +
Sbjct: 62 -NLEVEIPKL-GKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRE 119
Query: 153 TTKQKASQQI-------WQPRPQDFLKLNVDASFKTYTDPAGIGCIIHDPKGDFISAMAE 205
+ + Q+ W+ P ++K N DA+++ GIG I+ + G + A
Sbjct: 120 LEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGAR 179
Query: 206 TV-RGQTAEECESIALLRAVQWAKELAITRLIVESDNNNLINHIHDSTTTINWQS-QRHM 263
+ R + E E AL AV R+I ESD L+N ++ W + Q +
Sbjct: 180 ALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDF---WPTLQPAL 236
Query: 264 THIKALCNNFVIIQFHYSPRKTNILADSLAK 294
I+ L ++F ++F ++PR N +AD +A+
Sbjct: 237 EDIQQLLHHFEEVKFEFTPRGGNKVADRIAR 267