BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0690.1
(408 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 99 3e-22
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 84 8e-18
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 80 4e-16
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 80 6e-16
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 73 3e-14
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 165/400 (41%), Gaps = 57/400 (14%)
Query: 23 SQLTKVSQLI--TNNTWNTDIIRANFDTNTQNLIYAIPVNGEG-KDQRRWKLTKSGKFTV 79
S + KVS LI + W D+I F + LI + G D W T SG +TV
Sbjct: 166 SSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTV 225
Query: 80 NSMYHYLSS----NQMNMETSEYNWNFI----WSIQAIPQIKLFLWKICTKALPVRARIG 131
S Y L+ E SE + N I W Q P+I+ FLWK + +LPV +
Sbjct: 226 KSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALA 285
Query: 132 -KYIDNN---ISCPNCNNTESIEHALLHCALAKNIWFKYNIISENIQSVAEWIFSWEANE 187
+++ I CP+C E++ H L C A+ W I S I EW S N
Sbjct: 286 YRHLSKESACIRCPSCK--ETVNHLLFKCTFARLTW---AISSIPIPLGGEWADSIYVNL 340
Query: 188 KSCYTIENIH---------FAIILWILWKVRCDHCFQHEINDVKTVIRMIENYPK----- 233
+ + N + +LW LWK R + F+ + + V+R E+ +
Sbjct: 341 YWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIR 400
Query: 234 ------LTKKQGNHHHKHNTTWQPPAQNFIKINVDASFIDLTANVGISLIAHN--AESKF 285
TK Q N W+PP ++K N DA++ GI + N E K+
Sbjct: 401 TEAESCGTKPQVNRS--SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKW 458
Query: 286 IAAKVKSTRARNSEEGEAMAILQGIEWAKDS----NLKKIIIECDNINIINHLCNLNQST 341
+ A RA + A L+ + WA S +I E D+ +I LN
Sbjct: 459 MGA-----RALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEI---LNNDE 510
Query: 342 NWQSLMH-IKKIQDTTHEFEEVIFKHTRRDGNSSADKLAK 380
W SL I+ +Q +F EV F R+GN+ A+++A+
Sbjct: 511 IWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 83.6 bits (205), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 23/268 (8%)
Query: 132 KYIDNNISCPNCNNT-ESIEHALLHCALAKNIW-------FKYNIISENIQSVAEWIFSW 183
+++ SC C ++ E++ H L C A+ +W + ++++ + W+ +
Sbjct: 4 RHLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNL 63
Query: 184 EANEKSCYTIENIHFAIILWILWKVRCDHCFQHEINDVKTVIR-MIENYPK------LTK 236
E I N+ +LW LWK R + F+ + D V+R +E++ + L
Sbjct: 64 EVEIPKLGKIGNL-VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEG 122
Query: 237 KQGNHHHKHNTT--WQPPAQNFIKINVDASFIDLTANVGISLIAHNAESKFIAAKVKS-T 293
K + N + W+ P ++K N DA++ GI I N + ++
Sbjct: 123 KASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALP 182
Query: 294 RARNSEEGEAMAILQGIEWAKDSNLKKIIIECDNINIINHLCNLNQSTNWQSLMH-IKKI 352
R +N E E A+ + N K+II E D ++N L N W +L ++ I
Sbjct: 183 RTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLL---NSDDFWPTLQPALEDI 239
Query: 353 QDTTHEFEEVIFKHTRRDGNSSADKLAK 380
Q H FEEV F+ T R GN AD++A+
Sbjct: 240 QQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 41/309 (13%)
Query: 103 IWSIQAIPQIKLFLWKICTKALPVRARIG-KYIDNNISCPN-CNNTESIEHALLHCALAK 160
IW ++ P+IK FLWK+ + AL + ++I N+ C C E+ +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 161 NIWFKYNIISENIQSVA-------EWIFSWEANEKSCYT---IENIHFAI-ILWILWKVR 209
+W I + +++ E + S SC + + AI ILW LWK R
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLS------SCLANRQPQLFNLAIWILWRLWKSR 131
Query: 210 CDHCFQ-----------------HEINDVKTVIRMIENYPKLTKKQGNHHHKHNTTWQPP 252
FQ E D T ++ + ++ Q + T WQ P
Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMAR--TKWQRP 189
Query: 253 AQNFIKINVDASFIDLTANVGISLIAHNAESKFIA-AKVKSTRARNSEEGEAMAILQGIE 311
+IK N D +F T N + + ++ + + +S E E A++ ++
Sbjct: 190 PSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQ 249
Query: 312 WAKDSNLKKIIIECDNINIINHLCNLNQSTNWQSLMHIKKIQDTTHEFEEVIFKHTRRDG 371
A +K+I E D+ + L N N+ N+ I++ + FEE +FK R
Sbjct: 250 HAWSQGYRKVIFEGDSKQ-VEELMN-NEKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTN 307
Query: 372 NSSADKLAK 380
N AD LAK
Sbjct: 308 NQPADILAK 316
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/409 (23%), Positives = 168/409 (41%), Gaps = 54/409 (13%)
Query: 37 WNTDIIRANFDTNTQNLIYAIPVNGEGK-DQRRWKLTKSGKFTVNSMY----HYLSSNQM 91
W+ I D + I+ I + K D+ W +G++TV S Y H S+N
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 92 NMETSEYNWNF---IWSIQAIPQIKLFLWKICTKALPVRARI---GKYIDNNISCPNCNN 145
+ + + IW++ +P++K FLW+ ++AL R+ G ID SCP C+
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP--SCPRCHR 205
Query: 146 -TESIEHALLHCALAKNIW-----------FKYNIISENIQSVAEWIFSWEANEKSCYTI 193
ESI HAL C A W N ENI ++ ++ T+
Sbjct: 206 ENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFV--------QDTTM 257
Query: 194 ENIHFAIILWILWKV---RCDHCF-QHEINDVKTVIRM-IENYPKLTKKQGNHHHKHNTT 248
+ H + +W++W++ R + F + + KTV+ E + L Q + T
Sbjct: 258 SDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTR 317
Query: 249 --------WQPPAQNFIKINVDASF-IDLTANVGISLIAHNAESKFIAAKVKSTRARNSE 299
W+ P ++K N DA F + G +I ++ + +K N
Sbjct: 318 QIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPL 377
Query: 300 EGEAMAILQGIEWAKDSNLKKIIIECDNINIINHLCNLNQSTNWQSLMHIKKIQDTTHEF 359
E E A+L ++ ++ +E D +IN + ++ ++ + H++ I ++F
Sbjct: 378 EAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLAN--HLEDISFWANKF 435
Query: 360 EEVIFKHTRRDGNSSADKLAKWARKAKASKLWKN---VPFMLVKKYCNN 405
+ F RR GN A LAK+ S + +P L + +CN+
Sbjct: 436 ASIQFGFIRRKGNKLAHVLAKYG--CTYSTFYSGSGSLPIWLDRYFCND 482
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 15/217 (6%)
Query: 201 ILWILWKVRCDHCFQHEINDVKTVIRMIENYPK------LTKKQGNHHH----KHNTTWQ 250
++W +WK D F H +T + M N K +T +Q N + NT W
Sbjct: 47 LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWS 106
Query: 251 PPAQNFIKINVDASFIDLTANVGISLIAHNAESKFIAAKVKSTRAR-NSEEGEAMAILQG 309
PP ++ +K N DAS + G+ I N++ I + + R +EE E ++
Sbjct: 107 PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA 166
Query: 310 IEWAKDSNLKKIIIECDNINIINHLCNLNQSTNWQSLMHIKKIQDTTHEFEEVIFKHTRR 369
I+ + KK+I E DN I + N +S+N + + IQ FE + F R
Sbjct: 167 IQASYGFGHKKVIFEGDN-QTITRMIN-TKSSNPRLQHFLDTIQSWIPSFESIEFSFKHR 224
Query: 370 DGNSSADKLAKWARKAKAS-KLWKNVPFMLVKKYCNN 405
+ N AD LAK A K L+ + P+ L Y NN
Sbjct: 225 EQNGCADFLAKQAIKENTQWSLFHSCPYFL-SPYVNN 260