BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0780.1
(934 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 131 2e-31
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 110 9e-25
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 110 9e-25
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 111 1e-24
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 87 3e-17
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 184/401 (45%), Gaps = 25/401 (6%)
Query: 49 IIGDLNSILHPSDK-SGQPKPLPHYA-KKILSFTHEFGLQDLGFSGSPFTWSNRQFKGNL 106
++GD + I SD S +P ++ + + L D+ G +TWSN Q N
Sbjct: 223 LVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQ-DDNP 281
Query: 107 VQERLDRALSNLSWLSRYPHS-RVQHLPGVRSDHLPILLSTNPFTPTDSKPFKFIRTWMT 165
+ +LDRA++N W S +P + V L GV SDH P ++ K F++ T
Sbjct: 282 IIRKLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSFLST 340
Query: 166 HPDCRAFIQDNWLLSPTL------IQQKLNFLAINLSKWNKKVFGHIENRIKKLISSI-- 217
HP + W + + + L N++ FG+I+++ K+ + S+
Sbjct: 341 HPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLES 400
Query: 218 ---QTTTNP-NTLLSLYSQLEEAYN----QQESIWKEKSRVANIQLGDRNTKFFHAKAIT 269
Q TNP ++L + + +N ES +++KSR+ +Q GD NT+FFH +
Sbjct: 401 IQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILA 460
Query: 270 RNRKNHITNIKREDNSWCSDPSEISQI----FSDNLKIISTSSSPGNAGIIQNLFHSQIT 325
KN I ++ +D+ + +++ ++ ++ L S +P + I+++ +
Sbjct: 461 NQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCN 520
Query: 326 NSQNLVLTTTPNEDEIRNATFSLKPEVAPGPDGFPPFFYHTNWETVKPDIIQMVTNFFLS 385
++ L+ P++ EI A F++ APGPD F F+ +W VK I V FF +
Sbjct: 521 DTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRT 580
Query: 386 SSLPPCSNHTHICLIPKTKSPQSTADFRPISLLNTTYKIIT 426
L N T I LIPK + FRP+S YKIIT
Sbjct: 581 GHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 7/265 (2%)
Query: 583 INHLLFADDCIIFGRNTLDNISSLINILNAFGSESGQIINYNKSTIFFSKNTHPKFKRMI 642
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 643 SKALKVHQASSLDKYLGSKLFIGAKKTQAFTSLIDQIQNKFSKWKTNLLSQAGRSVVIST 702
+ + +YLG L T + L+++I+ + KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 703 VAAAVPRYQMQCFAIPKGVSKRIETIQRSFWWGK---SKSIHTINWSSICRPRRFGGLGF 759
V ++ + M F +P K I++I SF W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 760 RLPILDNEVFLSKLSWRLHKSPNAPWVQLLKAKYFPKAD--QPTPPKQNHSWIWKSLAQP 817
R N+V L KL WR+ S + WVQ L+ K + SW+WK + +
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 818 ISKINKLIFWDVNKGTKVNIWTDYW 842
+ + + D++ G+ + W D W
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 7/265 (2%)
Query: 583 INHLLFADDCIIFGRNTLDNISSLINILNAFGSESGQIINYNKSTIFFSKNTHPKFKRMI 642
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 643 SKALKVHQASSLDKYLGSKLFIGAKKTQAFTSLIDQIQNKFSKWKTNLLSQAGRSVVIST 702
+ + +YLG L T + L+++I+ + KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 703 VAAAVPRYQMQCFAIPKGVSKRIETIQRSFWWGK---SKSIHTINWSSICRPRRFGGLGF 759
V ++ + M F +P K I++I SF W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 760 RLPILDNEVFLSKLSWRLHKSPNAPWVQLLKAKYFPKAD--QPTPPKQNHSWIWKSLAQP 817
R N+V L KL WR+ S + WVQ L+ K + SW+WK + +
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 818 ISKINKLIFWDVNKGTKVNIWTDYW 842
+ + + D++ G+ + W D W
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 7/265 (2%)
Query: 583 INHLLFADDCIIFGRNTLDNISSLINILNAFGSESGQIINYNKSTIFFSKNTHPKFKRMI 642
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 643 SKALKVHQASSLDKYLGSKLFIGAKKTQAFTSLIDQIQNKFSKWKTNLLSQAGRSVVIST 702
+ + +YLG L T + L+++I+ + KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 703 VAAAVPRYQMQCFAIPKGVSKRIETIQRSFWWGK---SKSIHTINWSSICRPRRFGGLGF 759
V ++ + M F +P K I++I SF W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 760 RLPILDNEVFLSKLSWRLHKSPNAPWVQLLKAKYFPKAD--QPTPPKQNHSWIWKSLAQP 817
R N+V L KL WR+ S + WVQ L+ K + SW+WK + +
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 818 ISKINKLIFWDVNKGTKVNIWTDYW 842
+ + + D++ G+ + W D W
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Query: 656 KYLGSKLFIGAKKTQAFTSLIDQIQNKFSKWKTNLLSQAGRSVVISTVAAAVPRYQMQCF 715
+YLG L T + L+++I+ + KW LS AGR +IS+V ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 716 AIPKGVSKRIETIQRSFWWGK---SKSIHTINWSSICRPRRFGGLGFRLPILDNEVFLSK 772
+P K I++I SF W + + WS +C P+ GGLG R N+V L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 773 LSWRLHKSPNAPWVQLLKAKYFPKAD--QPTPPKQNHSWIWKSLAQPISKINKLIFWDVN 830
L WR+ S + WVQ L+ K + SW+WK + + + + + D++
Sbjct: 146 LIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 831 KGTKVNIWTDYW 842
G+ + W D W
Sbjct: 205 NGSNTSFWFDNW 216