BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g0890.1
(603 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 131 5e-32
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 128 3e-31
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 128 3e-31
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 126 4e-30
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 91 4e-21
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 131 bits (329), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 122/485 (25%), Positives = 212/485 (43%), Gaps = 41/485 (8%)
Query: 141 YPFSYQLLPIGVINQLEKAERNFWWGHATQEKKFHFIKWDIISSPKHKGGLGIRSLQQIN 200
Y + LLP V Q+ +FWW + + K H+ WD +S K +GG+G + ++ N
Sbjct: 6 YTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFN 65
Query: 201 EALIAKMTWRLNTNPNSIWVRLLKGKYVPYNDFWSCSAPSSPSPFWKVVLKTREVMEKKV 260
AL+ K WR+ + P S+ ++ K +Y +D + S PS WK + ++E++ +
Sbjct: 66 LALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGA 125
Query: 261 LWIIGDGSSVKIQLDPWLPNTHNHRPICVKELP-------SNIFWVADLIITNTNSWNMP 313
++G+G + I WL + + ++ +P S+I V+DLI + W
Sbjct: 126 RAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKD 185
Query: 314 LISHYFDSQSIQDIIRIKIPSRKQQDRLVWCPSERGKFSTKSYY---TEIKDLPT----L 366
+I F + I ++ R+ D W + G ++ KS Y T+I + + +
Sbjct: 186 VIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEV 245
Query: 367 NEKAYSFPWKQFWKRKEMKPNIQTFIWKLTHDGLATLNNIGKRLNHIPQYCRMCNTKEIE 426
+E + + +++ WK + P IQ F+WK + L + R C C + + E
Sbjct: 246 SEPSLNPIYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK-E 303
Query: 427 TVEHLFGTGPRFR-QLLQLTREVDLDQTPLDP---------VIRLKNILEDPQQREDKWC 476
TV HL F+ +LT + PL + + N+ Q E
Sbjct: 304 TVNHLL-----FKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ 358
Query: 477 ITTYLMWNWWKQRNELIFT----NSQPDLQRCWWSTREELRYVPYFQTLISTNEHEISE- 531
+ +L+W WK RNEL+F N+Q L+R EE R ++ + + S
Sbjct: 359 LVPWLLWRLWKNRNELVFRGREFNAQEVLRRA-EDDLEEWRIRTEAESCGTKPQVNRSSC 417
Query: 532 -NWCPPPTGCIKINFDGSFKE--TRASSAAVARDDQGNISDVRTQSFSPL-SPLHSELVG 587
W PPP +K N D ++ R V R+++G + + ++ L S L +EL
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA 477
Query: 588 FRSAV 592
R AV
Sbjct: 478 MRWAV 482
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/440 (26%), Positives = 187/440 (42%), Gaps = 38/440 (8%)
Query: 14 VTHLLFANDLIIFGDAKKQNSNAILQLMTQYEAFFGQKVNFEKSSIIFSRGVPNRIQQQF 73
+THL FA+DL++F D KK + ILQ+ ++ F G +++ EKS+I + GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 74 VTQLKAPIMTDQAKYLGALLLNPGNRIKSHEWLVDKFHNSLAGWKQKVISQAGRTVLIKS 133
+ +YLG LL + LV+K + W + +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 134 VLGPYCPYPFSYQLLPIGVINQLEKAERNFWWGHATQEKKFHFIKWDIISSPKHKGGLGI 193
V+ + S LP I +++ +F W K + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 194 RSLQQINEALIAKMTWRLNTNPNSIWVRLLKGKYVPYNDFWSCSAPSS-PSPFWKVVLKT 252
RSL++ N+ + K+ WR+ + S+WV+ L+ + FWS S ++ S WK +LK
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 253 REVMEKKVLWIIGDGSSVKIQLDPW-----LPNTHNHRPICVKELPSNIFWVADLIITNT 307
R + V I +GS+ D W L + HR C+ D+ IT
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRG-CI-----------DMGITLH 293
Query: 308 NSWNMPLISHYFDSQSIQDIIRIK--IPSRKQQDRLVWCPSERGK---------FSTKSY 356
S +++H ++RI+ I + Q + R K F+TK
Sbjct: 294 ASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKET 353
Query: 357 YTEIKDLPTLNEKAYSFPWKQFWKRKEMKPNIQTFIWKLTHDGLATLNNIGKRLNHIPQY 416
+ ++ P L Y W P W + L T + +
Sbjct: 354 WAATRE-PKLKVNWYKGVWFS-----HATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 417 CRMCNTKEIETVEHLFGTGP 436
C +C+ +ET +HLF T P
Sbjct: 408 CVLCH-HLVETRDHLFFTCP 426
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/440 (26%), Positives = 187/440 (42%), Gaps = 38/440 (8%)
Query: 14 VTHLLFANDLIIFGDAKKQNSNAILQLMTQYEAFFGQKVNFEKSSIIFSRGVPNRIQQQF 73
+THL FA+DL++F D KK + ILQ+ ++ F G +++ EKS+I + GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 74 VTQLKAPIMTDQAKYLGALLLNPGNRIKSHEWLVDKFHNSLAGWKQKVISQAGRTVLIKS 133
+ +YLG LL + LV+K + W + +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 134 VLGPYCPYPFSYQLLPIGVINQLEKAERNFWWGHATQEKKFHFIKWDIISSPKHKGGLGI 193
V+ + S LP I +++ +F W K + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 194 RSLQQINEALIAKMTWRLNTNPNSIWVRLLKGKYVPYNDFWSCSAPSS-PSPFWKVVLKT 252
RSL++ N+ + K+ WR+ + S+WV+ L+ + FWS S ++ S WK +LK
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 253 REVMEKKVLWIIGDGSSVKIQLDPW-----LPNTHNHRPICVKELPSNIFWVADLIITNT 307
R + V I +GS+ D W L + HR C+ D+ IT
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRG-CI-----------DMGITLH 293
Query: 308 NSWNMPLISHYFDSQSIQDIIRIK--IPSRKQQDRLVWCPSERGK---------FSTKSY 356
S +++H ++RI+ I + Q + R K F+TK
Sbjct: 294 ASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKET 353
Query: 357 YTEIKDLPTLNEKAYSFPWKQFWKRKEMKPNIQTFIWKLTHDGLATLNNIGKRLNHIPQY 416
+ ++ P L Y W P W + L T + +
Sbjct: 354 WAATRE-PKLKVNWYKGVWFS-----HATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 417 CRMCNTKEIETVEHLFGTGP 436
C +C+ +ET +HLF T P
Sbjct: 408 CVLCH-HLVETRDHLFFTCP 426
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 192/450 (42%), Gaps = 38/450 (8%)
Query: 14 VTHLLFANDLIIFGDAKKQNSNAILQLMTQYEAFFGQKVNFEKSSIIFSRGVPNRIQQQF 73
+THL FA+DL++F D KK + ILQ+ ++ F G +++ EKS+I + GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 74 VTQLKAPIMTDQAKYLGALLLNPGNRIKSHEWLVDKFHNSLAGWKQKVISQAGRTVLIKS 133
+ +YLG LL + LV+K + W + +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 134 VLGPYCPYPFSYQLLPIGVINQLEKAERNFWWGHATQEKKFHFIKWDIISSPKHKGGLGI 193
V+ + S LP I +++ +F W K + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 194 RSLQQINEALIAKMTWRLNTNPNSIWVRLLKGKYVPYNDFWSCSAPSS-PSPFWKVVLKT 252
RSL++ N+ + K+ WR+ + S+WV+ L+ + FWS S ++ S WK +LK
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 253 REVMEKKVLWIIGDGSSVKIQLDPW-----LPNTHNHRPICVKELPSNIFWVADLIITNT 307
R + V I +GS+ D W L + HR C+ D+ IT
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRG-CI-----------DMGITLH 293
Query: 308 NSWNMPLISHYFDSQSIQDIIRIK--IPSRKQQDRLVWCPSERGK---------FSTKSY 356
S +++H ++RI+ I + Q + R K F+TK
Sbjct: 294 ASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKET 353
Query: 357 YTEIKDLPTLNEKAYSFPWKQFWKRKEMKPNIQTFIWKLTHDGLATLNNIGKRLNHIPQY 416
+ ++ P L Y W P W + L T + +
Sbjct: 354 WAATRE-PKLKVNWYKGVW-----FSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 417 CRMCNTKEIETVEHLFGTGPRFRQLLQLTR 446
C +C+ +ET +HLF T P ++ LTR
Sbjct: 408 CVLCH-HLVETRDHLFFTCPYSAEVPFLTR 436
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 90.9 bits (224), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 141 YPFSYQLLPIGVINQLEKAERNFWWGHATQEKKFHFIKWD-IISSPKHKGGLGIRSLQQI 199
Y S L + +L A FWW ++K ++ W + S + GGLG R L
Sbjct: 6 YAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWF 65
Query: 200 NEALIAKMTWRLNTNPNSIWVRLLKGKYVPYNDFWSCSAPSSPSPFWKVVLKTREVMEKK 259
N+AL+AK ++R+ P+++ RLL+ +Y P++ CS + PS W+ ++ RE++ +
Sbjct: 66 NQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRG 125
Query: 260 VLWIIGDGSSVKIQLDPWL 278
+L IGDG K+ LD W+
Sbjct: 126 LLRTIGDGIHTKVWLDRWI 144