BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g1150.1
(1115 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 94 1e-21
AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWAR... 48 1e-05
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 93.6 bits (231), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 454 LDHIRAVFEVMRHNSLFMNIPKSFFFLDEVYFLGF--IISKSGMKVDPAKVRAISEWPIP 511
++H+ V ++ + + N K F ++ +LG IIS G+ DPAK+ A+ WP P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 512 SSPSEVRSFNGLASFYRRFIRDFTTVMAPLTDCLKKGKFLWGPQQDDSFSTIKQRLCSAP 571
+ +E+R F GL +YRRF++++ ++ PLT+ LKK W +F +K + + P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 572 VLAFPDFSKLF 582
VLA PD F
Sbjct: 121 VLALPDLKLPF 131
>AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWARD
LENGTH=216 | 201606
Length = 216
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 44 CTFPFSIGSYYRDSICCDVVDM--DNCHLIFGRPWIFDVDATYYCRANIFEFSWSNRTLK 101
C P SIG +Y+D + C VV+M + L+FG PW++ V AT+ R + W++ +
Sbjct: 156 CRVPVSIGDFYKDKVTCYVVNMEEEEDQLLFGGPWLYRVQATHNGRDDSCMIIWNHNMIL 215
Query: 102 L 102
L
Sbjct: 216 L 216