BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g1280.1
(767 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 139 1e-33
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 139 1e-33
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 115 7e-30
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 99 1e-23
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 5e-13
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 112/205 (54%), Gaps = 31/205 (15%)
Query: 583 LQQQQQDVSVHTRPKRLYKPVQRLGSDKPLRHYGQANV-------VEYALSVEDDEPV-- 633
+Q + SVHT +R KP L+ Y +V + LS E P+
Sbjct: 22 IQNDVPEPSVHTSHRRTRKPAY-------LQDYYCHSVASLTIHDISQFLSYEKVSPLYH 74
Query: 634 TFKQAITAAKRES----------WSVAMQEEMESLHKNQTWEVVPLPEGKSVIGCKWVYK 683
+F I AK S W AM +E+ ++ TWE+ LP K IGCKWVYK
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 684 KKEDSSEIKGT--RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELE 741
K +S GT RYKARLVAKGY Q+EG+D+ E FSPV K TS++++L+I A + L
Sbjct: 135 IKYNS---DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191
Query: 742 QLDVKTAFLHGDLEEEIYMAQPEGY 766
QLD+ AFL+GDL+EEIYM P GY
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGY 216
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 112/205 (54%), Gaps = 31/205 (15%)
Query: 583 LQQQQQDVSVHTRPKRLYKPVQRLGSDKPLRHYGQANV-------VEYALSVEDDEPV-- 633
+Q + SVHT +R KP L+ Y +V + LS E P+
Sbjct: 22 IQNDVPEPSVHTSHRRTRKPAY-------LQDYYCHSVASLTIHDISQFLSYEKVSPLYH 74
Query: 634 TFKQAITAAKRES----------WSVAMQEEMESLHKNQTWEVVPLPEGKSVIGCKWVYK 683
+F I AK S W AM +E+ ++ TWE+ LP K IGCKWVYK
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 684 KKEDSSEIKGT--RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELE 741
K +S GT RYKARLVAKGY Q+EG+D+ E FSPV K TS++++L+I A + L
Sbjct: 135 IKYNS---DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191
Query: 742 QLDVKTAFLHGDLEEEIYMAQPEGY 766
QLD+ AFL+GDL+EEIYM P GY
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGY 216
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 115 bits (289), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 189 GSIKVVKGSLVVMRGTRYGNLYKLLRTTITGDVAVGISGRDPTASTRLWHMRLGHMSEKG 248
G +KV+KG +++G R+ +LY L + TG+ + + +D TRLWH RL HMS++G
Sbjct: 27 GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRG 83
Query: 249 LSLMCGKGLLKDMKKPCMEFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWGPAKLP 307
+ L+ KG L K ++FCE C++GK HRV FST +H +K LDYVH+D+WG +P
Sbjct: 84 MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 99.0 bits (245), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/123 (42%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
Query: 622 EYALSVEDDEPVTFKQAITAAKRESWSVAMQEEMESLHKNQTWEVVPLPEGKSVIGCKWV 681
+Y+L++ K I A K W AMQEE+++L +N+TW +VP P ++++GCKWV
Sbjct: 15 KYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWV 74
Query: 682 YKKKEDSSEIKGT--RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLE 739
+K K S GT R KARLVAKG+ Q+EG+ + E +SPVV+ +IR +L++ LE
Sbjct: 75 FKTKLHSD---GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ--LE 129
Query: 740 LEQ 742
+ Q
Sbjct: 130 VGQ 132
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 66.6 bits (161), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 400 LNRTLLEKARCMRSNSGLGVEWWAESVATACYIVNRSPHSSLDDGIPYKVWSGEHADYGR 459
+NRT++EK R M GL + A++ TA +I+N+ P ++++ +P +VW Y
Sbjct: 1 MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60
Query: 460 LKVFGCTAYYHVKGNKLDNRAKK 482
L+ FGC AY H KL RAKK
Sbjct: 61 LRRFGCVAYIHCDEGKLKPRAKK 83