BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g1380.1
(152 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 74 9e-16
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 73.6 bits (179), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 49/196 (25%)
Query: 5 KPERFDGQNFKRWQQKM-YFLTILNINFVLTEPATT-------DVGEHERGKAGAVDA-W 55
K RFDG+++ W +M FL L + +VL+EP + + E +A A W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253
Query: 56 SKADYLCRNYILNCLDNTLYDIYCHT-KTAKELWDSLQ---------------EKYIS-- 97
+ DYLC +++N L + LY Y K AKELWD L+ KYI
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313
Query: 98 ---------------------EDAGMVIDEAFQVAAVIEKLPPSWNEYKKKLRHKRKDMY 136
AGM +DEAF V+ +I K PPSW + +L + +
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEY-LP 372
Query: 137 MQYLILQIRVEEEHLK 152
+ L+ +++ EEE L+
Sbjct: 373 VWMLMERVKAEEELLR 388