BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000081.1_g1850.1
         (299 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22440.1 | non-LTR retroelement reverse transcriptase | Chr2:...    51   4e-07
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143...    49   4e-06

>AT2G22440.1 | non-LTR retroelement reverse transcriptase |
           Chr2:9528910-9529917 FORWARD LENGTH=256 | 201606
          Length = 256

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 42/88 (47%)

Query: 15  TRIMEDKWIPEITEHIPTLIQVLPQNISWVADLIDKQTNTWNSSLLQQYFTRDSIIAITN 74
           TR+ +D WIP I       I  +  ++ +V DLID+ TN W    LQ       I  I  
Sbjct: 3   TRVWKDPWIPTILARPAKSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLILG 62

Query: 75  ITMATTNEKDRLIWKNTEQGNFTTKSYY 102
           I  + T   D   W +T+ GN+T KS Y
Sbjct: 63  IRPSRTYLSDGFSWSHTKSGNYTVKSGY 90


>AT4G29090.1 | Ribonuclease H-like superfamily protein |
           Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
          Length = 575

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 8   MIGDGTDTRIMEDKWIPEITEHIPTLIQVLP-------QNISWVADLIDKQTNTWNSSLL 60
           ++G+G D  I   KW+          +Q +P        +I  V+DLID+    W   ++
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187

Query: 61  QQYFTRDSIIAITNITMATTNEKDRLIWKNTEQGNFTTKSYY---SSIKTRPVLPTEISD 117
           +  F       I  +        D   W  T  G++T KS Y   + I  +   P E+S+
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247

Query: 118 FP----WPKFWKKTQMDPKIQIFTWRLIHDGVATSSNIG 152
                 + K WK +Q  PKIQ F W+ + + +  +  + 
Sbjct: 248 PSLNPIYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALA 285

Top