BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g1900.1
(87 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11580.1 | Regulator of chromosome condensation (RCC1) family... 107 8e-29
AT5G16040.2 | Regulator of chromosome condensation (RCC1) family... 58 4e-11
AT5G16040.1 | Regulator of chromosome condensation (RCC1) family... 57 5e-11
AT5G63860.1 | Regulator of chromosome condensation (RCC1) family... 57 6e-11
AT3G02510.2 | Regulator of chromosome condensation (RCC1) family... 53 1e-09
>AT5G11580.1 | Regulator of chromosome condensation (RCC1) family
protein | Chr5:3718913-3721125 FORWARD LENGTH=553 |
201606
Length = 553
Score = 107 bits (268), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 63/78 (80%), Gaps = 4/78 (5%)
Query: 8 SQKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISG 67
S+K++S+AAGEAHT+ALT DGCVYSWGRG FGRLGTGKE DEL PV ++F + E G
Sbjct: 15 SRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAE----G 70
Query: 68 DLIRFVEIAAGAYHSLAL 85
D IR V +AAGAYHSLA+
Sbjct: 71 DRIRIVGVAAGAYHSLAV 88
Score = 45.4 bits (106), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 10 KVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGIS--- 66
++V +AAG H+LA+++DG V+ WG +G+LG E+ L P IK RE S
Sbjct: 74 RIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGF-DGENSLAPCLIKNLFERETSSSSLN 132
Query: 67 ------GDLIRFVEIAAGAYHSLAL 85
G ++ + AG+ SLA+
Sbjct: 133 DSGREVGSDLKVCTVKAGSMMSLAI 157
>AT5G16040.2 | Regulator of chromosome condensation (RCC1) family
protein | Chr5:5241189-5243308 REVERSE LENGTH=341 |
201606
Length = 341
Score = 57.8 bits (138), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 9 QKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISGD 68
+ V IA G H LAL EDG +++WG +G+LGTG + +P+ ++ G+ D
Sbjct: 196 ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQ-------GL--D 246
Query: 69 LIRFVEIAAGAYHSLAL 85
+ V+IAAG +HS AL
Sbjct: 247 DLTLVDIAAGGWHSTAL 263
Score = 45.4 bits (106), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MSVTGKPSQKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEE--DELFPVQIKF 57
+ V G +V IAAG H+ ALT +G VY WGRG GRLG G + ++ P ++
Sbjct: 240 IPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNL 298
>AT5G16040.1 | Regulator of chromosome condensation (RCC1) family
protein | Chr5:5240860-5243308 REVERSE LENGTH=396 |
201606
Length = 396
Score = 57.4 bits (137), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 9 QKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISGD 68
+ V IA G H LAL EDG +++WG +G+LGTG + +P+ ++ G+ D
Sbjct: 196 ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQ-------GL--D 246
Query: 69 LIRFVEIAAGAYHSLAL 85
+ V+IAAG +HS AL
Sbjct: 247 DLTLVDIAAGGWHSTAL 263
Score = 50.4 bits (119), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1 MSVTGKPSQKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEE--DELFPVQIKFD 58
+ V G +V IAAG H+ ALT +G VY WGRG GRLG G + ++ P ++
Sbjct: 240 IPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNL- 298
Query: 59 SVREDGISGDLIRFVEIAAGAYHSLAL 85
++G+ I ++++ G HS+AL
Sbjct: 299 ------LAGEDI--IQVSCGGTHSVAL 317
Score = 43.1 bits (100), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 9 QKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKE----EDELFPVQI-----KFDS 59
+ ++ ++ G H++ALT DG ++S+GRG GRLG G++ + P+ I +F+
Sbjct: 302 EDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNH 361
Query: 60 VREDGISGDLIRFVEIAAGAYHSLAL 85
E+ + + V A G H+LA+
Sbjct: 362 TDEEDDGKWIAKHV--ACGGRHTLAI 385
>AT5G63860.1 | Regulator of chromosome condensation (RCC1) family
protein | Chr5:25554821-25558587 REVERSE LENGTH=440 |
201606
Length = 440
Score = 57.0 bits (136), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 9 QKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISGD 68
QKVV ++ G HTLA+TE V++WGRGT G+LG G+ D FP I+ SV DG SG
Sbjct: 328 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV--DGASGQ 385
Query: 69 LIRFVEI 75
I I
Sbjct: 386 HIESSNI 392
Score = 56.6 bits (135), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 11 VVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISGDLI 70
+ I+ G HT+ALT DG +Y WG FG++G G D+ PVQ++F D
Sbjct: 278 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP---------DDQ 328
Query: 71 RFVEIAAGAYHSLAL 85
+ V+++ G H+LA+
Sbjct: 329 KVVQVSCGWRHTLAV 343
Score = 53.1 bits (126), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 9 QKVVSIAAGEAHTLALTEDGC-VYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISG 67
++VS+ G HT+A ++ G VYSWG G FGRLG G D P+ IK + G
Sbjct: 67 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK-------ALHG 119
Query: 68 DLIRFVEIAAGAYHSLAL 85
IR +IA G H LA+
Sbjct: 120 --IRIKQIACGDSHCLAV 135
Score = 52.8 bits (125), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 10 KVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIK-FDSVREDGISGD 68
++ IA G++H LA+T +G V SWGR G+LG G ED L P +I+ F+
Sbjct: 121 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG--------- 171
Query: 69 LIRFVEIAAGAYHSLAL 85
IR +AAGA H+ A+
Sbjct: 172 -IRIKMVAAGAEHTAAV 187
Score = 49.3 bits (116), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 7 PSQKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGIS 66
P +KV+ I+AG +H++AL V SWGRG G+LG G ED P Q+ +
Sbjct: 13 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS---------A 63
Query: 67 GDLIRFVEIAAGAYHSLA 84
D + V + GA H++A
Sbjct: 64 LDGHQIVSVTCGADHTVA 81
Score = 48.5 bits (114), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 10 KVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQI 55
++ +AAG HT A+TEDG +Y WG G +G LG G D L P ++
Sbjct: 173 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 218
Score = 43.1 bits (100), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 3 VTGKPSQKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVRE 62
VT +K+ +A G HT++++ G +Y++G +G+LG G ED L P ++
Sbjct: 218 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL------- 270
Query: 63 DGISGDLIRFVEIAAGAYHSLAL 85
+ +S I +I+ G H++AL
Sbjct: 271 EALSNSFIS--QISGGWRHTMAL 291
>AT3G02510.2 | Regulator of chromosome condensation (RCC1) family
protein | Chr3:522524-524536 REVERSE LENGTH=310 | 201606
Length = 310
Score = 53.1 bits (126), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 9 QKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSVREDGISGD 68
+ V IA G H LAL EDG + +WG +G+LGTG + PV ++ G+ D
Sbjct: 196 ENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQ-------GL--D 246
Query: 69 LIRFVEIAAGAYHSLAL 85
+ V+IAAG +HS AL
Sbjct: 247 DLTLVDIAAGGWHSTAL 263
Score = 45.8 bits (107), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%)
Query: 1 MSVTGKPSQKVVSIAAGEAHTLALTEDGCVYSWGRGTFGRLGTGKEEDELFPVQIKFDSV 60
+ V G +V IAAG H+ ALT+ G VY WGRG GRLG G + V K + +
Sbjct: 240 VPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLL 299
Query: 61 REDGI 65
E+ I
Sbjct: 300 AEEDI 304