BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2040.1
(186 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 43 7e-05
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 11 DKDICVVDSRSTNLIFRNNKYFETL-KLYKANAITIAGSSSLIEGSGRATIILPHGTKIT 69
D DI ++ + + KYF TL + +KA T+ G+ L+EG G I + G K T
Sbjct: 276 DDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKT 335
Query: 70 IDDALFSTKSLKNLLSFKNIRRNGYHIET 98
I + +F +N+LSF + Y I T
Sbjct: 336 IRNVIFVPGLNRNVLSFGKMVSKRYSIST 364