BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2080.1
(718 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32910.1 | nuclear pore complex Nup85-like protein | Chr4:158... 961 0.0
>AT4G32910.1 | nuclear pore complex Nup85-like protein |
Chr4:15881364-15885210 FORWARD LENGTH=716 | 201606
Length = 716
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/718 (65%), Positives = 582/718 (81%), Gaps = 4/718 (0%)
Query: 1 MPGLISDSGEA-LVPYSPEVRDPIVHRLQHGLKPPISRLSISWSRGNCLRVSIFQKPSLD 59
MPG+ S+SG LV +S + + P+++ L +GLK P+ RLSISW GN LRV++ + P L
Sbjct: 1 MPGMSSESGGGELVLFSTKEKTPVLYPLSYGLKSPVHRLSISWGCGNNLRVTVLRNPEL- 59
Query: 60 GTENSTKETGGKVLEVKLSSGDEELDDVQKRKIAYCSVSPFALLQSRKNSVSAFSKMSMN 119
++ E GGKV+ V+LS D E+ D Q R+IAY SVSPFALLQSR+NS+S+ SKM M+
Sbjct: 60 -RDDDDGEVGGKVVNVRLSGEDGEISDPQWRRIAYGSVSPFALLQSRRNSISSLSKMDMS 118
Query: 120 SSSFQVEWGDQVMEYSKEIKSLFGDPKTSPASVIEDPRTVVKTVEEPTCLKAAWELMEIF 179
SS +Q W + VMEYS++IKSL + + PA +IEDPR+V+K EEPT LKAAWELME+F
Sbjct: 119 SSLYQTAWWEYVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELF 178
Query: 180 YADKQSHAWLPECLVDWLANYDCLLSATKTTVHSRLVDLQNGLVNSQAIEDDSKYWEGIS 239
YADK +WLPE LVDWL+ YD LLS++ T++S+L D Q LV QAIEDD +YWE ++
Sbjct: 179 YADKTCLSWLPERLVDWLSEYDILLSSSHPTIYSKLQDFQKELVGLQAIEDDPRYWEVMA 238
Query: 240 SALAVGWLDIVVKLLRLHGSYQVDQLGNRETENGLVEAVAVLVSKMPRMRPEVSRRGLGE 299
SAL+VGWL+IVVKLL LHGSYQ+DQLG+RETENGLVEAVAVL+SKMPRMRP++ GE
Sbjct: 239 SALSVGWLEIVVKLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMPRMRPQLEDGKFGE 298
Query: 300 CFKTKPDFMKAWEQWRGQIAKLDCSSAFWVQCDHPQTREGLKNLLQIMLGNNNILTVSTY 359
C KPDFMK E+W+ QI KL+CS AFWVQC H QTREGL+N+L+IM+GN + L +T
Sbjct: 299 CSAAKPDFMKTRERWQSQITKLECS-AFWVQCAHHQTREGLRNMLKIMIGNADCLRAATC 357
Query: 360 NWMELFISHFLYIRPFTMGLEGMYNLAQKCMQLKPISNTHKLLELILGILGENTEVVLAE 419
NWMELF+SH LY+RPFT GL+GM++LAQKC+Q KP++ +HKLL L++GILGENTEVVLAE
Sbjct: 358 NWMELFVSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIGILGENTEVVLAE 417
Query: 420 CSRSFGPWMVAHAIELLTAGSNQAEMLLHEERYNLGGIGIEELHRLVYAQVLSSHTLTWQ 479
CS+ FG WMVAHA+ELLTAGS + E+L+HEE+ LGGI +EELHRLVYAQVLSSH LTWQ
Sbjct: 418 CSKEFGSWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVYAQVLSSHALTWQ 477
Query: 480 IAPVYLTSCMKQGMSLLELLLYKQPVHHNRTLLKSLEICRLYELESISTNLMKIAGIYHW 539
IAP+YL SC KQG+ LLELL Y+QPV N+ L+KSLEICRLYEL ++S LMKI+G++HW
Sbjct: 478 IAPIYLASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVSAKLMKISGVHHW 537
Query: 540 KHGRKGSGVFWLQQARDEVRLNRIAQQLFDYVGKSISDDSFKQWEGVIELLSSETRTAGG 599
KHGRKGSG+FWLQQARDE L+ IAQQLFD VGKS+SD+S KQWEG++ELL SE++ +GG
Sbjct: 538 KHGRKGSGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLVELLGSESQISGG 597
Query: 600 LEFLHKYRDLKKFLQRVQDGNSTDVTQQAVDSLILLMRNPSTPQRFWLSLMHDSLKLLNW 659
L+FLHKYRD K+ L+ V DG + D +AV+ L+ LM++PSTPQRFWL L+HDSLKLLNW
Sbjct: 598 LDFLHKYRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWLPLLHDSLKLLNW 657
Query: 660 RERPLLNVSQTNLLLNKLQELSIARLRPDFSESDLPPHALGTVRLALATNLGRAILEE 717
ER LLNV+QTNL+LNKLQELSIARLRP F ES+L A+G+VRLALATNLGRA LEE
Sbjct: 658 PERSLLNVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALATNLGRAFLEE 715