BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2180.1
(617 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 133 1e-32
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 105 2e-24
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 99 2e-22
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 96 2e-21
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 99 2e-21
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 170/343 (49%), Gaps = 35/343 (10%)
Query: 284 DEMVWTLTNSGNFTIKSMYRYLS---NGIRDPETVE-------WSFIWNIRTTPRIKLFL 333
D W T+SG++T+KS Y L+ N P+ V + IW +T+P+I+ FL
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 334 WKCCTNSLPVKDKIG-KYIGNSYSCAFCED-RETITHVLLHCNFARAIWFHYNIR----- 386
WKC +NSLPV + +++ +C C +ET+ H+L C FAR W +I
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGG 330
Query: 387 --TDGIVSVLEWILNWPSLD---DSIMASLAKILWFIWKARCEMCFGKKDIMPRQVIRKI 441
D I L W+ N + + + + +LW +WK R E+ F ++ ++V+R+
Sbjct: 331 EWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRA 390
Query: 442 QCYATSFHDDRIPKSNTIPP--------KWLPPPQPFLKINVDASFSKYTDPAGIGCIIH 493
+ + +S P +W PPP ++K N DA++++ + GIG ++
Sbjct: 391 EDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLR 450
Query: 494 DANGDFVIAKAESI-RGQTAEECECLAILKAVLWAEELNLTHIIIESDNNNLITHIQDNN 552
+ G+ A ++ + ++ E E A+ AVL ++I ESD+ LI I +N+
Sbjct: 451 NEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLI-EILNND 509
Query: 553 NVINWQSLH-HMEHIRARRTKFEQIQFHFGPRKTNILADALAK 594
+ W SL ++ ++ ++F +++F F PR+ N LA+ +A+
Sbjct: 510 EI--WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 30/302 (9%)
Query: 320 IWNIRTTPRIKLFLWKCCTNSLPVKDKIGK-YIGNSYSC-AFCEDRETITHVLLHCNFAR 377
IW ++T P+IK FLWK + +L D + + +I N C C++ ET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 378 AIWF-----HYNIRTDGIV--SVLEWILN--WPSLDDSIMASLAKILWFIWKARCEMCFG 428
+W H +RT GI + +E +L+ + + ILW +WK+R ++ F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 429 KKDIMPRQVIRK--------------IQCYATSFHDDRIPKSNTIPPKWLPPPQPFLKIN 474
+K I + +++ +Q H R + KW PP ++K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 475 VDASFSKYTDPAGIGCIIHDANGDFVIAKAESIRGQTAE--ECECLAILKAVLWAEELNL 532
D +F+ T A G ++ D NG + + ++I T++ E E A++ A+ A
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVY-MGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGY 256
Query: 533 THIIIESDNNNLITHIQDNNNVINWQSLHHMEHIRARRTKFEQIQFHFGPRKTNILADAL 592
+I E D+ + + NN +N+ + + R + +FE+ F + PR N AD L
Sbjct: 257 RKVIFEGDSKQVEELM--NNEKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQPADIL 314
Query: 593 AK 594
AK
Sbjct: 315 AK 316
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 26/268 (9%)
Query: 349 KYIGNSYSCAFCED-RETITHVLLHCNFARAIW-------FHYNIRTDGIVSVLEWILNW 400
+++ SC C D RET+ H+L C FAR +W + TD + + L W+LN
Sbjct: 4 RHLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNL 63
Query: 401 ----PSLDDSIMASLAKILWFIWKARCEMCFGKKDIMPRQVIRKIQCYATSFHDDRIPKS 456
P L I + +LW +WK+R E+ F K+ +V+R+ + R +
Sbjct: 64 EVEIPKL-GKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEG 122
Query: 457 NTIPP--------KWLPPPQPFLKINVDASFSKYTDPAGIGCIIHDANGDFVIAKAESI- 507
P +W PP ++K N DA++ GIG I+ + +G + A ++
Sbjct: 123 KASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALP 182
Query: 508 RGQTAEECECLAILKAVLWAEELNLTHIIIESDNNNLITHIQDNNNVINWQSLH-HMEHI 566
R + E E A+ AVL N II ESD L+ + ++ W +L +E I
Sbjct: 183 RTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDD---FWPTLQPALEDI 239
Query: 567 RARRTKFEQIQFHFGPRKTNILADALAK 594
+ FE+++F F PR N +AD +A+
Sbjct: 240 QQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 23/287 (8%)
Query: 327 PRIKLFLWKCCTNSLPVKDK-IGKYIGNSYSCAFCEDRETITHVLLHCNFARAIW----- 380
P+IKLFLWK +LPV + + ++I +++ CA C ET TH+L HC+FA +W
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 381 --FHYNIRTDGI--VSVLEWILNWPSLDDSIMASLAKILWFIWKARCEMCFGKKDIMPRQ 436
H I T + +++L+ + P + I W IWKAR ++ F +
Sbjct: 62 QLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVIE 121
Query: 437 VIRKIQCYATSFHDDR--IPKSNTIPPKWLPPPQPFLKIN----VDASFSKYTDPAGIGC 490
+ K A ++ + +PK P+ P L + VDA++ + + AG G
Sbjct: 122 TVTKAVQDALAWQSAQLALPKVRVATPR--PNSTTTLTHDFLCYVDAAWQQQSSLAGSGW 179
Query: 491 IIH---DANGDFVIAKAESIRGQTAEECECLAILKAVLWAEELNLTHIIIESDNNNLITH 547
+ + + A R + E AI A+L A +L + +++ SD+ +++
Sbjct: 180 VFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDA 239
Query: 548 IQDNNNVINWQSLHHMEHIRARRTKFEQIQFHFGPRKTNILADALAK 594
+ N+NV + + IR+ R +F I F F PR N +ADA AK
Sbjct: 240 L--NSNVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 154/369 (41%), Gaps = 56/369 (15%)
Query: 269 IQRAILSINLHPSAEDEMVWTLTNSGNFTIKSMYRYLSNGIRDPETVEWSF--------- 319
I R L+ + P D+++W +G +T++S Y L++ DP T +
Sbjct: 105 IHRIYLAKSKKP---DKIIWNYNTTGEYTVRSGYWLLTH---DPSTNIPAINPPHGSIDL 158
Query: 320 ---IWNIRTTPRIKLFLWKCCTNSLPVKDKIG-KYIGNSYSCAFC-EDRETITHVLLHCN 374
IWN+ P++K FLW+ + +L +++ + + SC C + E+I H L C
Sbjct: 159 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCP 218
Query: 375 FARAIW-------FHYNIRTDGIVSVLEWILNWPSLDDSIMASLAKIL-----WFIWKAR 422
FA W + ++ + ILN+ + D+ M+ K+L W IWKAR
Sbjct: 219 FATMAWRLSDSSLIRNQLMSNDFEENISNILNF--VQDTTMSDFHKLLPVWLIWRIWKAR 276
Query: 423 CEMCFGKKDIMPRQVIRKIQCY------ATSFHDDRIPKSNTIPP---KWLPPPQPFLKI 473
+ F K P + + + AT H + I +W PP ++K
Sbjct: 277 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 336
Query: 474 NVDASFSKYTDPAGIGCIIHDANGDFVIAKAESIRGQTAE-ECECLAILKAVLWAEELNL 532
N DA F A G II + G + + + + E E A+L A+
Sbjct: 337 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 396
Query: 533 THIIIESDNNNLITHIQDNNNVINWQSLH-----HMEHIRARRTKFEQIQFHFGPRKTNI 587
T + +E D LI N+IN S H H+E I KF IQF F RK N
Sbjct: 397 TQVFMEGDCQTLI-------NLINGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNK 449
Query: 588 LADALAKWG 596
LA LAK+G
Sbjct: 450 LAHVLAKYG 458