BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2220.1
(691 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 182 8e-48
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 182 8e-48
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 114 4e-29
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 50 6e-07
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 182 bits (462), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 136/234 (58%), Gaps = 27/234 (11%)
Query: 475 PSVLTNHHPMQTRLKSGIVKPKGIPDHVSHFT---TLH------------AFHASYIAAI 519
PSV T+H +TR KP + D+ H T+H + S++ I
Sbjct: 29 PSVHTSHR--RTR------KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCI 80
Query: 520 SSIPEPKTYKVAAQDKNWVQSIKSEYQALVQNKTWSLTRRLPSMNVLGCKWVFKVKYNSD 579
+ EP TY A + W ++ E A+ TW + P+ +GCKWV+K+KYNSD
Sbjct: 81 AKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 140
Query: 580 GSLERYKARLVAQGYNQQEGIDYQETFSPVVKIQTVRVTLTLAVTHKWYIQQLDVSNAFL 639
G++ERYKARLVA+GY QQEGID+ ETFSPV K+ +V++ L ++ + + + QLD+SNAFL
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 640 HGDLSEVVYMKQPAGFEDLQF----PTYVCQLHKSLYGLKQAPRAWFTRIASYL 689
+GDL E +YMK P G+ Q P VC L KS+YGLKQA R WF + + L
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 182 bits (462), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 136/234 (58%), Gaps = 27/234 (11%)
Query: 475 PSVLTNHHPMQTRLKSGIVKPKGIPDHVSHFT---TLH------------AFHASYIAAI 519
PSV T+H +TR KP + D+ H T+H + S++ I
Sbjct: 29 PSVHTSHR--RTR------KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCI 80
Query: 520 SSIPEPKTYKVAAQDKNWVQSIKSEYQALVQNKTWSLTRRLPSMNVLGCKWVFKVKYNSD 579
+ EP TY A + W ++ E A+ TW + P+ +GCKWV+K+KYNSD
Sbjct: 81 AKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 140
Query: 580 GSLERYKARLVAQGYNQQEGIDYQETFSPVVKIQTVRVTLTLAVTHKWYIQQLDVSNAFL 639
G++ERYKARLVA+GY QQEGID+ ETFSPV K+ +V++ L ++ + + + QLD+SNAFL
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 640 HGDLSEVVYMKQPAGFEDLQF----PTYVCQLHKSLYGLKQAPRAWFTRIASYL 689
+GDL E +YMK P G+ Q P VC L KS+YGLKQA R WF + + L
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 114 bits (285), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 7/114 (6%)
Query: 524 EPKTYKVAAQDKNWVQSIKSEYQALVQNKTWSLTRRLPSMNVLGCKWVFKVKYNSDGSLE 583
EPK+ A +D W Q+++ E AL +NKTW L + N+LGCKWVFK K +SDG+L+
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 584 RYKARLVAQGYNQQEGIDYQETFSPVVKIQTVRVTLTLAVTHKWYIQQLDVSNA 637
R KARLVA+G++Q+EGI + ET+SPVV+ T+R L +A QQL+V +
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA-------QQLEVGQS 133
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 269 SIDLTQNPYEKPQDNIEEAYSVPASAQTWHNRLEHPSKDIILSLEKEKIIKLSSRDFMSL 328
S+ + Q E + N+ E + + WH+RL H S+ + L K+ + S +
Sbjct: 46 SLYILQGSVETGESNLAE--TAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKF 103
Query: 329 CNSCQLSKSHKLPFYSPDSTSSGPLQLIYYDIWGPSPV 366
C C K+H++ F + T+ PL ++ D+WG V
Sbjct: 104 CEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141