BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2330.1
(168 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 65 2e-12
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 65 2e-12
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 64 2e-12
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 64 2e-12
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 56 3e-09
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 64.7 bits (156), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 14 KYLGAQLFIGAQKKKVFNDIIHQIKNKLEKWNHSFLSQAGRTVVISAIAAPVPRYQMQCF 73
+YLG L + ++ +I+ ++ KW LS AGR +IS++ + + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 AIPKGTSKCISTIQKSFWWGRSRGICTK---SLSAICLPKHMGGLGIHRPELDNIVMLSK 130
+P K I +I SF W K + S +C PK GGLGI + N V L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 131 LAYGIKAELHAMWVQFLK 148
L + + + ++WVQ+L+
Sbjct: 146 LIWRMLSST-SLWVQWLR 162
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 64.7 bits (156), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 14 KYLGAQLFIGAQKKKVFNDIIHQIKNKLEKWNHSFLSQAGRTVVISAIAAPVPRYQMQCF 73
+YLG L + ++ +I+ ++ KW LS AGR +IS++ + + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGTSKCISTIQKSFWWGRSRGICTK---SLSAICLPKHMGGLGIHRPELDNIVMLSK 130
+P K I +I SF W K + S +C PK GGLGI + N V L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAYGIKAELHAMWVQFLK 148
L + + + ++WVQ+L+
Sbjct: 200 LIWRMLSST-SLWVQWLR 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 64.3 bits (155), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 14 KYLGAQLFIGAQKKKVFNDIIHQIKNKLEKWNHSFLSQAGRTVVISAIAAPVPRYQMQCF 73
+YLG L + ++ +I+ ++ KW LS AGR +IS++ + + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGTSKCISTIQKSFWWGRSRGICTK---SLSAICLPKHMGGLGIHRPELDNIVMLSK 130
+P K I +I SF W K + S +C PK GGLGI + N V L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAYGIKAELHAMWVQFLK 148
L + + + ++WVQ+L+
Sbjct: 200 LIWRMLSST-SLWVQWLR 216
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 64.3 bits (155), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 14 KYLGAQLFIGAQKKKVFNDIIHQIKNKLEKWNHSFLSQAGRTVVISAIAAPVPRYQMQCF 73
+YLG L + ++ +I+ ++ KW LS AGR +IS++ + + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGTSKCISTIQKSFWWGRSRGICTK---SLSAICLPKHMGGLGIHRPELDNIVMLSK 130
+P K I +I SF W K + S +C PK GGLGI + N V L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAYGIKAELHAMWVQFLK 148
L + + + ++WVQ+L+
Sbjct: 200 LIWRMLSST-SLWVQWLR 216
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 55.8 bits (133), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 14 KYLGAQLFIGAQKKKVFNDIIHQIKNKLEKWNHSFLSQAGRTVVISAIAAPVPRYQMQCF 73
+YLG L + ++ +I+ ++ KW LS AGR +IS++ + + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 AIPKGTSKCISTIQKSFWWGRSRGICTK---SLSAICLPKHMGGLGI 117
+P K I +I SF W K + S +C PK GGLGI
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 132