BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2340.1
(216 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 58 1e-09
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 51 3e-07
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 49 1e-06
AT3G26855.1 | RNA-directed DNA polymerase (reverse transcriptase... 46 3e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 6 FDDATKNLIKTI-PINEDGEDQKKWMLTDSGKFTVKSMY---NHFCTSMNSPMPKS---- 57
F + + LI + P D W T SG +TVKS Y +SP S
Sbjct: 191 FPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSL 250
Query: 58 -PNWKFIWFIPTVPRIQIFIWKICSNALPVRARIG-QYIDNN---LNCPNYNEIESIEHA 112
P ++ IW T P+IQ F+WK SN+LPV + +++ + CP+ E++ H
Sbjct: 251 NPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK--ETVNHL 308
Query: 113 LLHCPLARNMWFYFNI-----------ISINITSVTGWIFSWENASNKGKMESNIHYGTI 161
L C AR W +I I +N+ W+F+ N + + + S + +
Sbjct: 309 LFKCTFARLTWAISSIPIPLGGEWADSIYVNLY----WVFNLGNGNPQWEKASQL-VPWL 363
Query: 162 LWIIWKTRCDHCFQ-HEINS 180
LW +WK R + F+ E N+
Sbjct: 364 LWRLWKNRNELVFRGREFNA 383
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 25 DQKKWMLTDSGKFTVKSMYNHFCT--SMNSPMPKSPNWKF-----IWFIPTVPRIQIFIW 77
D+ W +G++TV+S Y S N P P+ IW +P +P+++ F+W
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 176
Query: 78 KICSNALPVRARI---GQYIDNNLNCPN-YNEIESIEHALLHCPLARNMW 123
+ S AL R+ G ID +CP + E ESI HAL CP A W
Sbjct: 177 RALSQALATTERLTTRGMRIDP--SCPRCHRENESINHALFTCPFATMAW 224
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 69 VPRIQIFIWKICSNALPVRAR-IGQYIDNNLNCPNYNEIESIEHALLHCPLARNMWFYFN 127
+P+I++F+WK + ALPV A+ + ++I + +C E+ H L HC A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW-NLA 59
Query: 128 IISINITSVTGWIFSWENASNKGKM--ESNIHYGT----ILWIIWKTRCDHCFQHEINSI 181
+ + + I N K + IH T I W IWK R FQ NS
Sbjct: 60 PLQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQ---NSH 116
Query: 182 TTIITMIKNFPKTIPPWKTINLSF 205
++I + + W++ L+
Sbjct: 117 FSVIETVTKAVQDALAWQSAQLAL 140
>AT3G26855.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9898680-9899350 REVERSE LENGTH=163 | 201606
Length = 163
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 63 IWFIPTVPRIQIFIWKICSNALPVRARIGQYIDNNLN----CPNYNEIESIEHALLHCPL 118
IW + P+I++ IWK +NALPV A Q + N++ C + E+I H L +CP
Sbjct: 9 IWSLKISPKIKLLIWKALNNALPVGA---QLLSRNISIEPFCTRCRDFETITHILFNCPF 65
Query: 119 ARNMWFYFNIISINITSVTGWIFSWENASNKGKM 152
A+ +II W+ A G M
Sbjct: 66 AQREVIMKSIIDAK---------EWQTAQQMGSM 90