BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2460.1
(243 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 43 9e-05
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 52 SSHQDCRVWKSLV---VPEISVKAMYTLLADNLQTNQPIFSIIW-KSNIPMRVSLFLWSV 107
S QD +W++ +P S + + + + T P ++W K IP R SL W
Sbjct: 90 SRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPT-VPWAKVVWFKEYIP-RFSLITWMS 147
Query: 108 MLERIPTVDNLRKKGFTTPNR---CS-----------LCGVTRGVWNKFLVSMNIAWTFS 153
LER+PT D LR G P+ CS C + +W F + F
Sbjct: 148 FLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFG 207
Query: 154 ENIADIFLAWKGIKGNSHKRAIVNLISKAIVWAVWLGRNEIIF 196
A ++ ++ SH I+ L+ ++ V+ VW RN IF
Sbjct: 208 LPAASSWILQLPLR--SHSTTILKLLLQSAVYHVWKERNARIF 248