BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2670.1
(414 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 123 2e-30
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 105 2e-24
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 94 6e-21
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 89 3e-19
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 69 1e-12
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 123 bits (309), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 193/443 (43%), Gaps = 43/443 (9%)
Query: 4 RDTLRLGCCWLIGSGDNIIVNRDPWVPDI-------TDKIPKVISTLPANIIKVSDLIDA 56
++ LR G ++G+G++II+ R W+ ++P ++I+KVSDLID
Sbjct: 118 QEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDE 177
Query: 57 ETHTWKTSLIREVFQPLSAEAIIRI-PLSRRITEDKLLWIPHPKGIFSAKSFYKSIIPEH 115
W+ +I +F + + I + P RRI D W G ++ KS Y +
Sbjct: 178 SGREWRKDVIEMLFPEVERKLIGELRPGGRRIL-DSYTWDYTSSGDYTVKSGYWVLTQII 236
Query: 116 PTSRAPMDFPWPQL-------WKLTNVEPKVQLFLWRLVNKGLPVKTSIKRGAPTIDSTC 168
+P + P L WK + PK+Q FLW+ ++ LPV ++ + +S C
Sbjct: 237 NKRSSPQEVSEPSLNPIYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESAC 295
Query: 169 PQCNQQDETMEHLFGTCSAVTELWTLA--------QQISNLPHNPNPVLLIQTLLHKQTK 220
+C ET+ HL C+ W ++ + ++ N V + + K
Sbjct: 296 IRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEK 355
Query: 221 ERDKVFWIYLLWWYWKSRNLICFKGRGLSHQEIIQLAA--------KQASTILSTNPE-N 271
V W LLW WK+RN + F+GR + QE+++ A + + T P+ N
Sbjct: 356 ASQLVPW--LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVN 413
Query: 272 PFVVQEWLPPATGTIKINFDGAFS--NLGAAIAGIARNDKGESVMEMVERV--EASSALE 327
W PP +K N D ++ N I + RN+KGE V M R + S LE
Sbjct: 414 RSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGE-VKWMGARALPKLKSVLE 472
Query: 328 SECLALLAAVRMVDNLGQGLFIIEGDCKTAIDAILEGPDHYPWRVRALLLEARALGDLHN 387
+E A+ AV + I E D + I+ IL + +P ++ + + + L
Sbjct: 473 AELEAMRWAVLSLSRFQYNYVIFESDSQVLIE-ILNNDEIWP-SLKPTIQDLQRLLSQFT 530
Query: 388 GVKFQYCPREANGSAHQLAHSAL 410
VKF + PRE N A ++A +L
Sbjct: 531 EVKFVFIPREGNTLAERVARESL 553
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 105 bits (262), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/434 (24%), Positives = 186/434 (42%), Gaps = 46/434 (10%)
Query: 7 LRLGCCWLIGSGDNI------IVNRDPWVPDITDKIPKVISTLPANIIKVSDLID--AET 58
L+ G LIG G NI IV+ P P T++ K ++ +++L +
Sbjct: 34 LKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMT--------INNLFERKGSY 85
Query: 59 HTWKTSLIREVFQPLSAEAIIRIPLSRRITEDKLLWIPHPKGIFSAKSFYKSIIPEHPTS 118
+ W S I + I RI L++ DK++W + G ++ +S Y ++ P++
Sbjct: 86 YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY-WLLTHDPST 144
Query: 119 RAPMDFP-------WPQLWKLTNVEPKVQLFLWRLVNKGLPVKTSIKRGAPTIDSTCPQC 171
P P ++W L + PK++ FLWR +++ L + ID +CP+C
Sbjct: 145 NIPAINPPHGSIDLKTRIWNLP-IMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRC 203
Query: 172 NQQDETMEHLFGTCSAVTELWTLA------QQISNLPHNPNPVLLIQTLLHKQTKERDKV 225
++++E++ H TC T W L+ Q+ + N ++ + + K+
Sbjct: 204 HRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKL 263
Query: 226 FWIYLLWWYWKSRNLICFKGRGLSHQEIIQLAAKQASTILS---TNPENPFVVQ------ 276
++L+W WK+RN + F S + + A + L+ ++ + P +
Sbjct: 264 LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENK 323
Query: 277 -EWLPPATGTIKINFDGAFS--NLGAAIAGIARNDKGESVM-EMVERVEASSALESECLA 332
EW P +K NFD F L A I RN G + ++ S+ LE+E A
Sbjct: 324 IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKA 383
Query: 333 LLAAVRMVDNLGQGLFIIEGDCKTAIDAILEGPDHYPWRVRALLLEARALGDLHNGVKFQ 392
LLAA++ G +EGDC+T I+ I H + L + + ++F
Sbjct: 384 LLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSS--LANHLEDISFWANKFASIQFG 441
Query: 393 YCPREANGSAHQLA 406
+ R+ N AH LA
Sbjct: 442 FIRRKGNKLAHVLA 455
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 46/316 (14%)
Query: 128 QLWKLTNVEPKVQLFLWRLVNKGLPVKTSIKRGAPTIDSTCPQCNQQDETMEHLFGTCSA 187
++WKL PK++ FLW+L++ L ++KR C +C Q+DET +HLF C
Sbjct: 17 KIWKLKTA-PKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFY 75
Query: 188 VTELWTLAQQISNLPHN-----------PNPVLLIQTLLHKQTKERDKVFWIYLLWWYWK 236
++W + S +PH +LL L ++Q + + WI LW WK
Sbjct: 76 AQQVW----RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWI--LWRLWK 129
Query: 237 SRNLICFKGRGLSHQEIIQLAAKQASTILSTNP--------------ENPFVVQ-EWLPP 281
SRN + F+ + +S Q +Q A TN + P + + +W P
Sbjct: 130 SRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRP 189
Query: 282 ATGTIKINFDGAFSN-LGAAIAGIARNDKGESVMEMVERVEA--SSALESECLALLAAVR 338
+ IK N+DGAF++ A AG D+ M + + + S +LESE AL+ A++
Sbjct: 190 PSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQ 249
Query: 339 MVDNLGQGLFIIEGDCKTAIDAILEGPD----HYPWRVRALLLEARALGDLHNGVKFQYC 394
+ G I EGD K ++ ++ + W + E R F++
Sbjct: 250 HAWSQGYRKVIFEGDSK-QVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWV 303
Query: 395 PREANGSAHQLAHSAL 410
PR N A LA L
Sbjct: 304 PRTNNQPADILAKHHL 319
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 37/307 (12%)
Query: 129 LWKLTNVEPKVQLFLWRLVNKGLPVKTSIKRGAPTIDSTCPQCNQQDETMEHLFGTCSAV 188
+WKL +V PK++ FLWR V L T ++ D C +C ++ET+ H+ C
Sbjct: 37 IWKL-HVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYT 95
Query: 189 TELWTLAQQISNLPHNP------NPVLLIQTLLHKQTKERDKVFWIYLLWWYWKSRNLIC 242
+W A I P N LIQ + T D+ +++W WKSRN+
Sbjct: 96 QSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFL 155
Query: 243 FKGRGLSHQEIIQLAAKQASTILSTN----------PENPFVV-----QEWLPPATGTIK 287
F+ + S + + A+ L+ N NP +W PP G +K
Sbjct: 156 FQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVK 215
Query: 288 INFDGAFSNLGAAIAG--IARNDKGESVMEMVERVEASS-ALESECLALLAAVRMVDNLG 344
NFD ++ R G V+ ++++S+ +L +E L L A++++ G
Sbjct: 216 CNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHG 275
Query: 345 QGLFIIEGDCKTAIDAILEGPDHYPWRVRALLLEARALGDLHNGVKFQYCP-----REAN 399
E D K+ + I G DH + L+ + R H +K YC RE N
Sbjct: 276 LRYVWFESDSKSLVTLINNGEDHS--LLGTLIYDIR-----HWMLKLPYCSLEFVNRERN 328
Query: 400 GSAHQLA 406
+A LA
Sbjct: 329 SAADALA 335
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 26/267 (9%)
Query: 165 DSTCPQCNQQDETMEHLFGTCSAVTELWTLA--------QQISNLPHNPNPVLLIQTLLH 216
+++C +C ET+ HL C +W ++ + +L N VL ++ +
Sbjct: 9 EASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIP 68
Query: 217 KQTKERDKVFWIYLLWWYWKSRNLICFKGRGLSHQEIIQLAAKQ-----ASTILSTNPEN 271
K K + V W LLW WKSRN + FKG+ E+++ A + L
Sbjct: 69 KLGKIGNLVPW--LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASG 126
Query: 272 PFVVQ----EWLPPATGTIKINFDGAF--SNLGAAIAGIARNDKGESVMEMVERV--EAS 323
P V + +W P +K N D + N I I RN+ G V+ M R
Sbjct: 127 PQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESG-GVLWMGARALPRTK 185
Query: 324 SALESECLALLAAVRMVDNLGQGLFIIEGDCKTAIDAILEGPDHYPWRVRALLLEARALG 383
+ LE+E AL AV + I E D + ++ +L D +P ++ L + + L
Sbjct: 186 NVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVN-LLNSDDFWP-TLQPALEDIQQLL 243
Query: 384 DLHNGVKFQYCPREANGSAHQLAHSAL 410
VKF++ PR N A ++A ++
Sbjct: 244 HHFEEVKFEFTPRGGNKVADRIARESI 270