BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g2740.1
(178 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 65 7e-14
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 59 1e-10
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 65.5 bits (158), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 66 LINGNPGPIFYPSRGIRQGDPLSPFLFTLAMEGLSRILVSNPDEGKFLGFPTNNPNLTIS 125
+ING P + PSRG+RQGDPLSP+LF L E LS + ++G+ G +N + I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 126 HLLFADD 132
HLLFADD
Sbjct: 73 HLLFADD 79
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 59.3 bits (142), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 3 QEIIHSFKQMKGATGFFGLKLDMSKAYDRIEWSFLNDIMRKLGFSDHWINMI 54
QE +HS ++ KG G+ LKLD+ KAYDRI W +L D + GF + W+ I
Sbjct: 34 QEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWLPEI 85