BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000081.1_g2880.1
         (136 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00340.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:37375-39...   176   2e-52
ATCG00350.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:39605-41...    59   6e-11

>ATCG00340.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:37375-39579
           REVERSE LENGTH=734 | 201606
          Length = 734

 Score =  176 bits (446), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 87/92 (94%)

Query: 22  SHDDISEECLYQNIFASHFGQLAIIFLWTSRNLFHVAWEGNFESWVNEPLHIRHVAHAIW 81
           SHDDI+EE LYQNIFASHFGQLAIIFLWTS NLFHVAW+GNFE+WV +PLH+R +AHAIW
Sbjct: 33  SHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIW 92

Query: 82  DPHFGQPPVEAFTRGGALGPVNVAYSGVYQWW 113
           DPHFGQP VEAFTRGGALGPVN+AYSGVYQWW
Sbjct: 93  DPHFGQPAVEAFTRGGALGPVNIAYSGVYQWW 124


>ATCG00350.1 | Photosystem I%2C PsaA/PsaB protein | ChrC:39605-41857
           REVERSE LENGTH=750 | 201606
          Length = 750

 Score = 59.3 bits (142), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 22  SHDDISEECLYQNIFASHFGQLAIIFLWTSRNLFHVAWEGNFESWVNEPLHIRHVAHAIW 81
           SH    EE + + +F++HFGQL+IIFLW S   FH A   N+E+W+++P HI   A  +W
Sbjct: 58  SHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVW 116

Query: 82  DPHFGQPPVEAFTRGGALGPVNVAYSGVYQWWDSFAPVS-MQLDDTS 127
            P  GQ  +     GG  G + +  SG +Q W +    S +QL  T+
Sbjct: 117 -PIVGQEILNGDVGGGFRG-IQIT-SGFFQIWRASGITSELQLYCTA 160

Top