BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3150.1
(562 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 3e-10
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 3e-10
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 60 2e-09
AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675 RE... 57 2e-08
AT5G51080.1 | RNase H family protein | Chr5:20769022-20770675 RE... 57 2e-08
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 4 VGLGVVLTSPEGDLIQQTIRCGFKATNNETEYEALIAGMNLAKEMGVQKLAIKSDSQLVV 63
G G VL + + ++ ATNN EY AL+ G+ A + G + + + DS LV
Sbjct: 170 AGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVC 229
Query: 64 NQLQGTYQAKDVKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADALANLGSSIPTKDAQ 123
Q+QG ++ KMA KEL + F + + R +N AD AN S+I D Q
Sbjct: 230 MQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN--SAIFLADGQ 287
Query: 124 T 124
T
Sbjct: 288 T 288
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 4 VGLGVVLTSPEGDLIQQTIRCGFKATNNETEYEALIAGMNLAKEMGVQKLAIKSDSQLVV 63
G G VL + + ++ ATNN EY AL+ G+ A + G + + + DS LV
Sbjct: 170 AGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVC 229
Query: 64 NQLQGTYQAKDVKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADALANLGSSIPTKDAQ 123
Q+QG ++ KMA KEL + F + + R +N AD AN S+I D Q
Sbjct: 230 MQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQAN--SAIFLADGQ 287
Query: 124 T 124
T
Sbjct: 288 T 288
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 5 GLGVVLTSPEGDLIQQTIRCGFK-ATNNETEYEALIAGMNLAKEMGVQKLAIKSDSQLVV 63
G VL + +G LI + +R G ATNN EY ALI G+ A E G + + +K DS+LV
Sbjct: 233 GAAAVLKTEDGSLICR-VRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVC 291
Query: 64 NQLQGTYQAKDVKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADALANLGSSIPTKDAQ 123
Q++G ++ +A K L ++ V R N AD ANL +P + +
Sbjct: 292 MQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLAVRLPEGEVE 351
Query: 124 T 124
Sbjct: 352 V 352
>AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 5 GLGVVLTSPEGDLIQQTIRCGFK-ATNNETEYEALIAGMNLAKEMGVQKLAIKSDSQLVV 63
G VL + +G LI + +R G ATNN EY LI G+ A E G K+ +K+DS+LV
Sbjct: 202 GAAAVLKTEDGSLIFK-MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVC 260
Query: 64 NQLQGTYQAKDVKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADALANLGSSI 117
Q++G ++ ++ K+L + V R N AD AN+ + +
Sbjct: 261 MQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARL 314
>AT5G51080.1 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 5 GLGVVLTSPEGDLIQQTIRCGFK-ATNNETEYEALIAGMNLAKEMGVQKLAIKSDSQLVV 63
G VL + +G LI + +R G ATNN EY LI G+ A E G K+ +K+DS+LV
Sbjct: 202 GAAAVLKTEDGSLIFK-MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVC 260
Query: 64 NQLQGTYQAKDVKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADALANLGSSI 117
Q++G ++ ++ K+L + V R N AD AN+ + +
Sbjct: 261 MQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARL 314