BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3160.1
(460 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 58 6e-10
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 238 LEHLKQAFEVLRRYNMKLNPAKCSFGVSSGKFLGY--MVTQRGIEANPDQINSVMGIPSP 295
+ HL ++ ++ N KC+FG +LG+ +++ G+ A+P ++ +++G P P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 296 KCIKDVQKLAGRVAALSRFISKSSERCYLFFTTLRKGKNFEWTPACEEALQQLKRYLTSP 355
K +++ G RF+ K+ + T L K + +WT A + LK +T+
Sbjct: 61 KNTTELRGFLGLTGYYRRFV-KNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTL 119
Query: 356 PLLSKPKDGEKLFIYMAVSETAVSTVLVREE 386
P+L+ P KL V + S + RE+
Sbjct: 120 PVLALPD--LKLPFVTRVGKWNWSCFITREQ 148