BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3270.1
(214 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 52 6e-08
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 52 9e-08
AT5G16486.1 | RNA-directed DNA polymerase (reverse transcriptase... 51 1e-07
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 51 2e-07
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 51 2e-07
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 51.6 bits (122), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 153 KNIWNNIIPPKISFVLWALYLQALPTLDTLKRRGFIFPNMCALCNHEEETLDHLFFLCSF 212
K IW PK +F+ W L T D + GFIFP +C CN +ET HLFF C F
Sbjct: 45 KAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEF 104
Query: 213 SN 214
+
Sbjct: 105 AR 106
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 152 SKNIWNNIIPPKISFVLWALYLQALPTLDTLKRRGFIFPNMCALCNHEEETLDHLFFLCS 211
+K +W P+ S + W +L+ LPT D L+ G P+ LC++ +ET HLFF CS
Sbjct: 128 AKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECS 187
Query: 212 FS 213
FS
Sbjct: 188 FS 189
>AT5G16486.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:5383597-5384226 REVERSE LENGTH=209 | 201606
Length = 209
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 82/212 (38%), Gaps = 22/212 (10%)
Query: 10 WKQIQAFSKSVKAGSCVTINRGSKTSFWEDAWARSTPL---KDDFKSIWKFSKT-KDASV 65
WK I + + G +FW + W PL D + S ++ASV
Sbjct: 11 WKSICKLRPMAREFVVCKVGSGITCNFWSENWTNLGPLIHLTGDLGP--RVSGLPRNASV 68
Query: 66 EEVINGNFSSHNWDLNLSRTCSPAEAMKATDLLLKLSCTSLMDTSTSPTRSWTPSKNCEF 125
+ + W +N SR+ +P + L L S +L + W + E
Sbjct: 69 ADALRDGV----WWINGSRSRNPIIQLLKNCLPLS-SVVNLQVDAEDDLFMWKVGGS-EA 122
Query: 126 SV---SSFYHHHLNFFSTKNKANIQRDFPSKNIWNNIIPPKISFVLWALYLQALPTLDTL 182
SV S+ HLN K + K IW PK +F+ W LPT D L
Sbjct: 123 SVGFSSAATWIHLNPVGEKVDWH-------KAIWFKGRIPKHAFISWVNIRHRLPTRDKL 175
Query: 183 KRRGFIFPNMCALCNHEEETLDHLFFLCSFSN 214
G P++C LCN +ET HLFF C F+
Sbjct: 176 LSWGLHVPSLCLLCNAFDETRQHLFFDCVFAG 207
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 28 INRGSKTSFWEDAWARSTPL---KDDFKSIWKFSKTKDASVEEVINGNFSSHNWDLNLSR 84
+ G FW D+W PL D+ S +A V E + N W L LSR
Sbjct: 17 LGNGRIAHFWHDSWTSLGPLIKVMGDYGSR-SLRIPLNARVVEALGVN----GWKLPLSR 71
Query: 85 TCSPAEAMKATDLLLKLSCTSLMDTSTSPTRSWTPSKNCEFSVSSFYHHHLNFFSTKNKA 144
+ +PA+A+ + T T+P+ + T + ++ V F S +
Sbjct: 72 S-APAQAIH-----------DHISTITTPSPA-TIEDSFDWVVGGVVCQ--GFSSARTWD 116
Query: 145 NIQRDFP----SKNIWNNIIPPKISFVLWALYLQALPTLDTLKRRGFIFPNMCALCNHEE 200
I+ P +K +W PK +F +W L LPT L G I C LC E
Sbjct: 117 AIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIET 176
Query: 201 ETLDHLFFLCSFS 213
E+ DHL F C F+
Sbjct: 177 ESRDHLLFSCEFA 189
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 17/214 (7%)
Query: 10 WKQIQAFSKSVKAGSCVTINRGSKTSFWEDAWARSTPLKDDFKSIWKFSKTKDASVEEVI 69
WK I A + ++ G+ + G W W S P + + + + ASV ++
Sbjct: 111 WKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALR-MQRVPPQEYASVSSIL 169
Query: 70 NG----NFSSHNWDLNLSRTCSPAEAMKATDLLLKLSCTSLMDTSTSPTRSWTPSKNCEF 125
+ S W ++ P E + L+ ++D+ T W + + ++
Sbjct: 170 KVSDLIDESGREWRKDVIEMLFP-EVERKLIGELRPGGRRILDSYT-----WDYTSSGDY 223
Query: 126 SVSSFYHHHLNFFSTKNKANIQRDFPSKN-----IWNNIIPPKISFVLWALYLQALPTLD 180
+V S Y L K + + PS N IW + PKI LW +LP
Sbjct: 224 TVKSGYWV-LTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAG 282
Query: 181 TLKRRGFIFPNMCALCNHEEETLDHLFFLCSFSN 214
L R + C C +ET++HL F C+F+
Sbjct: 283 ALAYRHLSKESACIRCPSCKETVNHLLFKCTFAR 316