BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3290.1
(403 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 92 7e-20
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 92 9e-20
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 92 9e-20
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 92 1e-19
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 85 2e-17
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 14/201 (6%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSC-SWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHP 69
+W++ L+R +FW++ ++ SW W++IL R LA V++ IH+G NT FW D W
Sbjct: 159 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 218
Query: 70 SGSLADRFSVFHQVDSSLREEALVSDFLVNGQWVCSDQLRYD-LGSVFDSMQEVEVGGLI 128
G L D +D + A V++ +VN + + R+D L + D + EV GL
Sbjct: 219 IGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRHRHDTLLRIEDVIAEVRHQGLT 275
Query: 129 A--DTVVWKITTSGE-----YTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITL 181
+ DTV WK +G+ + K+T+ + R KV W VW PK+S + WI +
Sbjct: 276 SGEDTVRWK--GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAI 333
Query: 182 KRGLKTKAKLRGWGLDIDDKC 202
K L T ++ W D C
Sbjct: 334 KNRLTTGDRMLSWNAGADSSC 354
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 14/201 (6%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSC-SWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHP 69
+W++ L+R +FW++ ++ SW W++IL R LA V++ IH+G NT FW D W
Sbjct: 213 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 272
Query: 70 SGSLADRFSVFHQVDSSLREEALVSDFLVNGQWVCSDQLRYD-LGSVFDSMQEVEVGGLI 128
G L D +D + A V++ +VN + + R+D L + D + EV GL
Sbjct: 273 IGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRHRHDTLLRIEDVIAEVRHQGLT 329
Query: 129 A--DTVVWKITTSGE-----YTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITL 181
+ DTV WK +G+ + K+T+ + R KV W VW PK+S + WI +
Sbjct: 330 SGEDTVRWK--GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAI 387
Query: 182 KRGLKTKAKLRGWGLDIDDKC 202
K L T ++ W D C
Sbjct: 388 KNRLTTGDRMLSWNAGADSSC 408
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 14/201 (6%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSC-SWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHP 69
+W++ L+R +FW++ ++ SW W++IL R LA V++ IH+G NT FW D W
Sbjct: 213 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 272
Query: 70 SGSLADRFSVFHQVDSSLREEALVSDFLVNGQWVCSDQLRYD-LGSVFDSMQEVEVGGLI 128
G L D +D + A V++ +VN + + R+D L + D + EV GL
Sbjct: 273 IGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRHRHDTLLRIEDVIAEVRHQGLT 329
Query: 129 A--DTVVWKITTSGE-----YTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITL 181
+ DTV WK +G+ + K+T+ + R KV W VW PK+S + WI +
Sbjct: 330 SGEDTVRWK--GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAI 387
Query: 182 KRGLKTKAKLRGWGLDIDDKC 202
K L T ++ W D C
Sbjct: 388 KNRLTTGDRMLSWNAGADSSC 408
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 14/201 (6%)
Query: 11 EWVKRNLIRGKNFWTMKTPSSC-SWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHP 69
+W++ L+R +FW++ ++ SW W++IL R LA V++ IH+G NT FW D W
Sbjct: 213 QWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 272
Query: 70 SGSLADRFSVFHQVDSSLREEALVSDFLVNGQWVCSDQLRYD-LGSVFDSMQEVEVGGLI 128
G L D +D + A V++ +VN + + R+D L + D + EV GL
Sbjct: 273 IGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRHRHDTLLRIEDVIAEVRHQGLT 329
Query: 129 A--DTVVWKITTSGE-----YTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITL 181
+ DTV WK +G+ + K+T+ + R KV W VW PK+S + WI +
Sbjct: 330 SGEDTVRWK--GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAI 387
Query: 182 KRGLKTKAKLRGWGLDIDDKC 202
K L T ++ W D C
Sbjct: 388 KNRLTTGDRMLSWNAGADSSC 408
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 14/190 (7%)
Query: 22 NFWTMKTPSSC-SWCWRRILGSRDLARNLVQYVIHDGRNTFFWRDIWHPSGSLADRFSVF 80
+FW++ ++ SW W++IL R LA V++ IH+G NT FW D W G L D
Sbjct: 142 SFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHR 201
Query: 81 HQVDSSLREEALVSDFLVNGQWVCSDQLRYD-LGSVFDSMQEVEVGGLIA--DTVVWKIT 137
+D + A V++ +VN + + R+D L + D + EV GL + DTV WK
Sbjct: 202 GCIDMGITLHASVAEAVVNHR---PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWK-- 256
Query: 138 TSGE-----YTVKDTYNSIRRKGPKVPWTNLVWCHEGVPKHSFITWITLKRGLKTKAKLR 192
+G+ + K+T+ + R KV W VW PK+S + WI +K L T ++
Sbjct: 257 GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRML 316
Query: 193 GWGLDIDDKC 202
W D C
Sbjct: 317 SWNAGADSSC 326