BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3460.1
(335 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 71 1e-13
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 66 7e-12
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 44 5e-05
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 23 FVSEKLDGTDYLVWKDQVETILYGADLIEFVDGSIEPPLMMTVVNNREILNPACQQWRKQ 82
FV+ L+ +Y VW++ ET+ ++ +DGS P M ++W+++
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE------------KRWKER 70
Query: 83 DSFVKSCLKATFSHEIKSDVLGLKTTT-DIWSYLDHTYTEELESKKDLLRSQLQSIKKGK 141
D VK + T + + ++ + T D+W L++ + + E++ ++L++
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 142 STVNEYLRKIKSLSDALTTVHDKVTDQELRRITLLGLDKEYNQFVISINNREGRIGFSEL 201
+V+EY +K+KSLSD LT V ++D+ L L GL ++Y+ + I ++ F+E
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 202 KSKLLHHE 209
+S LL E
Sbjct: 191 RSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 13 QNHSISNIAQFVSEKLD--GTDYLVWKDQVETILYGADLIEFVDGSIEPPLMMTVVNNRE 70
Q + +SNI + LD ++Y W++ T D++ +DG++ P N +
Sbjct: 9 QIYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLP------TNAND 62
Query: 71 ILNPACQQWRKQDSFVKSCLKATFSH-EIKSDVLGLKTTTDIWSYLDHTYTEELESKKDL 129
+ W+K+D VK L T + + + + T+ DIW + + + +++
Sbjct: 63 V------NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALR 116
Query: 130 LRSQLQSIKKGKSTVNEYLRKIKSLSDALTTVHDKVTDQELRRITLLGLDKEYNQFVISI 189
L S+L++ G V +Y RK+K L+D+L V VTD+ L L GL+ +++ + I
Sbjct: 117 LDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVI 176
Query: 190 NNREGRIGFSELKSKL 205
+R+ F + + L
Sbjct: 177 KHRQPFPSFDDAATML 192
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 17 ISNIAQFVSEKL--DGTDYLVWKDQVETILYGADLIEFVDGSIEPPLMMTVVNNREILNP 74
I + + F +KL D +Y+ WK + + L F+DG++ P + +P
Sbjct: 24 IHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------DPFSP 74
Query: 75 ACQQWRKQDSFVKSCLKATFSHEIKSDVLGLKTTTDIWSYLDHTYTEELESKKDLLRSQL 134
Q W + ++ V L + + ++ V+ +T +W L + ++ K LR +L
Sbjct: 75 LYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRL 134
Query: 135 QSIKKGKSTVNEYLRKI 151
++++G +V EY K+
Sbjct: 135 ATLRQGGDSVEEYFGKL 151