BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3520.1
(144 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 6e-12
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 59 1e-10
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 57 1e-10
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 58 2e-10
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 54 3e-09
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 62.0 bits (149), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 2 NVDASFTKATDPTGIGCIIRDEESKFIIATANSV-RCQNAAECEGLTILSSMQWAL---- 56
N DA++ GIG I+R+E + A ++ R +N E E L +++WA+
Sbjct: 148 NTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAE----LEALRWAVLTMS 203
Query: 57 QLNITHAHIESDNQALVNFINGQNIGLHWQSLK-IIQQIRSLIDNFEGIMFTCVPRDCNA 115
+ N ESD QALVN +N + W +L+ ++ I+ L+ +FE + F PR N
Sbjct: 204 RFNYKRIIFESDAQALVNLLNSDDF---WPTLQPALEDIQQLLHHFEEVKFEFTPRGGNK 260
Query: 116 PADAIAKW--GRRNEDRKVWNSVPSFVSALL 144
AD IA+ N D K+++ VP ++ + L
Sbjct: 261 VADRIARESISFSNYDPKLFSIVPQWLRSTL 291
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 58.5 bits (140), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 15/149 (10%)
Query: 2 NVDASFTKATDPTGIGCIIRDEESKFIIATANSV-RCQNAAECEGLTILSSMQWAL---- 56
N DA++ + + GIG ++R+E+ + A ++ + ++ E E L +M+WA+
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE----LEAMRWAVLSLS 486
Query: 57 QLNITHAHIESDNQALVNFINGQNIGLHWQSLK-IIQQIRSLIDNFEGIMFTCVPRDCNA 115
+ + ESD+Q L+ +N I W SLK IQ ++ L+ F + F +PR+ N
Sbjct: 487 RFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNT 543
Query: 116 PADAIAKWGRR--NEDRKVWNSVPSFVSA 142
A+ +A+ N D K+++ VPS+ +
Sbjct: 544 LAERVARESLSFLNYDPKLYSIVPSWARS 572
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 57.4 bits (137), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 2 NVDASFTKATDPTGIGCIIRDEESKFIIA-TANSVRCQNAAECEGLTILSSMQWALQLNI 60
N D SF + G ++RD +++A A + NA E E ++ SMQ
Sbjct: 63 NFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQALIISMQHCWSHGY 122
Query: 61 THAHIESDNQALVNFINGQNI--GLHWQSLKIIQQIRSLIDNFEGIMFTCVPRDCNAPAD 118
E DN+ L + ING + G+H I+ I + FE I F + R N PAD
Sbjct: 123 KRVCFEGDNKMLFDLINGSKVYFGVH----NWIRDIHWWLRKFESIHFNWIRRHHNTPAD 178
Query: 119 AIAK 122
+AK
Sbjct: 179 ILAK 182
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 57.8 bits (138), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 2 NVDASFTKATDPTGIGCIIRDEESKFIIATANSVRC-QNAAECEGLTILSSMQWALQLNI 60
NVD SF P G I+RD ++ A C NA ECE +L +MQ
Sbjct: 514 NVDGSFINGNIPGKGGWIVRDHNGRYEFAGQAIGNCIDNALECEFQALLMAMQHCWSKGY 573
Query: 61 THAHIESDNQALVNFINGQNIGLHWQSLKIIQQIRSLIDNFEGIMFTCVPRDCNAPADAI 120
E DN+ + + ING + +H+ + I+ I FE F R N PAD +
Sbjct: 574 RRICFEGDNKEMFDLING--LKMHFGAFNWIRDILWWASKFEQTQFQWTNRQNNKPADIL 631
Query: 121 AK 122
A+
Sbjct: 632 AR 633
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 53.9 bits (128), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 2 NVDASFTKATDPTGIGCIIRDEESKFIIATANSV--RCQNAAECEGLTILSSMQWALQLN 59
N D SF T T G +IRD++ F A +V NA E E ++ +MQ
Sbjct: 74 NYDGSFNYRTQQTNSGWLIRDDKG-FYKGAAQAVGGTMNNALESELQALVMAMQHTWSQG 132
Query: 60 ITHAHIESDNQALVNFINGQNIGLHWQSLKIIQQIRSLIDNFEGIMFTCVPRDCNAPADA 119
E D++ + +N + +H+ + I++ S FE ++F+ PR N PAD
Sbjct: 133 YRKVIFEGDSKQVEELLNRKQ--MHFGAFNWIREAWSWSKRFEEVIFSWTPRTNNQPADM 190
Query: 120 IAK 122
+AK
Sbjct: 191 LAK 193