BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000081.1_g3790.1
(245 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 4e-12
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 49 2e-06
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 49 2e-06
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 48 3e-06
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 62.0 bits (149), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 39 MAVLINGRSSASFNVSRGIRQGDPLSPFIFSLAIEGLSRHLENSNSQDQFIGFPIANSDT 98
+ +ING SRG+RQGDPLSP++F L E LS + Q + G ++N+
Sbjct: 10 LLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSP 69
Query: 99 SIKHLLFADD 108
I HLLFADD
Sbjct: 70 RINHLLFADD 79
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 100 IKHLLFADDCIIFGQNSLENIHNLKNIPQTFSEASGQMINYSKSTMFFSKNSHPKFKRMI 159
I HL FADD ++F +I + I F++ SG I+ KST++ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 160 IRALKVRQSSSLDKHLGTNLFIGANKKQVFSSLLGQIQGKLSKWQTNLLSQAGCSFVIST 219
+ + + ++LG L + L+ +I+ ++ KW LS AG +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IAAAVLRCQMQCFSPPKGISNSIETL 245
+ ++ M F P I+++
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSI 152
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 100 IKHLLFADDCIIFGQNSLENIHNLKNIPQTFSEASGQMINYSKSTMFFSKNSHPKFKRMI 159
I HL FADD ++F +I + I F++ SG I+ KST++ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 160 IRALKVRQSSSLDKHLGTNLFIGANKKQVFSSLLGQIQGKLSKWQTNLLSQAGCSFVIST 219
+ + + ++LG L + L+ +I+ ++ KW LS AG +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IAAAVLRCQMQCFSPPKGISNSIETL 245
+ ++ M F P I+++
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSI 152
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 100 IKHLLFADDCIIFGQNSLENIHNLKNIPQTFSEASGQMINYSKSTMFFSKNSHPKFKRMI 159
I HL FADD ++F +I + I F++ SG I+ KST++ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 160 IRALKVRQSSSLDKHLGTNLFIGANKKQVFSSLLGQIQGKLSKWQTNLLSQAGCSFVIST 219
+ + + ++LG L + L+ +I+ ++ KW LS AG +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IAAAVLRCQMQCFSPPKGISNSIETL 245
+ ++ M F P I+++
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSI 152