BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0030.1
(742 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 116 3e-27
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 117 5e-27
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 94 2e-20
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 90 2e-19
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 75 5e-14
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 181/409 (44%), Gaps = 51/409 (12%)
Query: 324 NLIDEEAPQVFW----VSDLIDQDSHSWNHNLVRRVFDNISAREILKIPTSRIQQKDKVI 379
NL + + FW +S +DQ H + H +I ++ ++ DK+I
Sbjct: 77 NLFERKGSYYFWDDSKISQFVDQSDHGFIH----------------RIYLAKSKKPDKII 120
Query: 380 WTLTEKGEFSSKSLYRTITVEQAS---SSNQQSIIVDFPWCKFWEIQSLVPRVLYFIWRV 436
W GE++ +S Y +T + ++ + N +D + W + ++P++ +F+WR
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK-TRIWNL-PIMPKLKHFLWRA 178
Query: 437 LHNAIP----VKTISMKFNTSEPKLCTFCFEHEETIDHLFLRCKFSKEIWFKSPLGLRTE 492
L A+ + T M+ + S P+ C E+I+H C F+ W S L
Sbjct: 179 LSQALATTERLTTRGMRIDPSCPR----CHRENESINHALFTCPFATMAWRLSDSSLIRN 234
Query: 493 EYLS--VQEMIKDWLNKQWNIEGIK----LGMYLLWQMWKSRNKIVFEGAKLDESWILTT 546
+ +S +E I + LN + L ++L+W++WK+RN +VF + S + +
Sbjct: 235 QLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLS 294
Query: 547 TAKMYLDYEEHREKEDESLNPIEQPFISET---WETPNANVVKINVDGAFSVN--QGAAA 601
D+ + ++ +P Q I+E W P A VK N D F V +
Sbjct: 295 AKAETHDWLNATQSHKKTPSPTRQ--IAENKIEWRNPPATYVKCNFDAGFDVQKLEATGG 352
Query: 602 CIARNHQGEILACETKTFLANTS--MESECRSIILGIELTIHLSLTCCEIEGDAKMALQA 659
I RNH G ++ + LA+TS +E+E ++++ ++ T T +EGD + +
Sbjct: 353 WIIRNHYGTPISWGSMK-LAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 411
Query: 660 CSTHLDHSPWKIRALIADFHDMKKFFESIVFKFIPREGNSAAHSLAKYA 708
+ HS + + D F SI F FI R+GN AH LAKY
Sbjct: 412 INGISFHS--SLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYG 458
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 23/387 (5%)
Query: 336 VSDLIDQDSHSWNHNLVRRVFDNISAREILKIPTSRIQQKDKVIWTLTEKGEFSSKSLYR 395
VSDLID+ W +++ +F + + I ++ + D W T G+++ KS Y
Sbjct: 171 VSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYW 230
Query: 396 TIT--VEQASSSNQQSIIVDFP-WCKFWEIQSLVPRVLYFIWRVLHNAIPVKTISMKFNT 452
+T + + SS + S P + K W+ Q+ P++ +F+W+ L N++PV +
Sbjct: 231 VLTQIINKRSSPQEVSEPSLNPIYQKIWKSQT-SPKIQHFLWKCLSNSLPVAGALAYRHL 289
Query: 453 SEPKLCTFCFEHEETIDHLFLRCKFSKEIWFKS----PLGLRTEEYLSVQEMIKDWL--- 505
S+ C C +ET++HL +C F++ W S PLG + + V W+
Sbjct: 290 SKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLY---WVFNL 346
Query: 506 ---NKQWNIEGIKLGMYLLWQMWKSRNKIVFEGAKLDESWILTTTAKMYLDYEEHREKED 562
N QW + +L +LLW++WK+RN++VF G + + +L ++ E E
Sbjct: 347 GNGNPQWE-KASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAES 405
Query: 563 ESLNPIEQPFISETWETPNANVVKINVDGAFSVN--QGAAACIARNHQGEILACETKTFL 620
P W P VK N D ++ + + + RN +GE+ +
Sbjct: 406 CGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALP 465
Query: 621 ANTS-MESECRSIILGIELTIHLSLTCCEIEGDAKMALQACSTHLDHSPWKIRALIADFH 679
S +E+E ++ + E D+++ ++ + D ++ I D
Sbjct: 466 KLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN--DEIWPSLKPTIQDLQ 523
Query: 680 DMKKFFESIVFKFIPREGNSAAHSLAK 706
+ F + F FIPREGN+ A +A+
Sbjct: 524 RLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 147/326 (45%), Gaps = 45/326 (13%)
Query: 417 CKFWEIQSLVPRVLYFIWRVLHNAIPVKTISMKFNTSEPKLCTFCFEHEETIDHLFLRCK 476
K W++++ P++ +F+W++L A+ + + C C + +ET HLF C
Sbjct: 16 AKIWKLKT-APKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCF 74
Query: 477 FSKEIWFKSPL--------GLRTEEYLSVQEMIKDWL-NKQWNIEGIKLGMYLLWQMWKS 527
+++++W S + G+ E + + ++ L N+Q + L +++LW++WKS
Sbjct: 75 YAQQVWRASGIPHQELRTTGITMETKMEL--LLSSCLANRQ--PQLFNLAIWILWRLWKS 130
Query: 528 RNKIVFEGAKLD------------ESWILTTTAKMYLDYEEHREKEDESLNPIEQPFISE 575
RN++VF+ + + W T T L+ + H + +QP ++
Sbjct: 131 RNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRH-------QQPTMAR 183
Query: 576 T-WETPNANVVKINVDGAFS--VNQGAAACIARNHQGEILAC-ETKTFLANTSMESECRS 631
T W+ P + +K N DGAF+ A + R+ G + + + S+ESE ++
Sbjct: 184 TKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQA 243
Query: 632 IILGIELTIHLSLTCCEIEGDAKMALQACST---HLDHSPWKIRALIADFHDMKKFFESI 688
+I+ ++ EGD+K + + + W I + +K FE
Sbjct: 244 LIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEA 298
Query: 689 VFKFIPREGNSAAHSLAKYAFENNVS 714
VFK++PR N A LAK+ + N S
Sbjct: 299 VFKWVPRTNNQPADILAKHHLQPNQS 324
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 13/270 (4%)
Query: 458 CTFCFEHEETIDHLFLRCKFSKEIWFKSPLGLRTEEYLSVQEMIKDWLNKQWNIEGIKLG 517
C C + ET++HL +C F++ +W SP+ E + + +E KLG
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLG 71
Query: 518 M------YLLWQMWKSRNKIVFEGAKLDESWILTTTAKMYLDYEEHREKEDESLNPIEQP 571
+LLW++WKSRN+++F+G + D +L + + ++ RE E ++ P +
Sbjct: 72 KIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVER 131
Query: 572 FISETWETPNANVVKINVDGAFSVN--QGAAACIARNHQGEILACETKTF-LANTSMESE 628
+S W+ P VK N D + + + I RN G +L + +E+E
Sbjct: 132 NLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAE 191
Query: 629 CRSIILGIELTIHLSLTCCEIEGDAKMALQACSTHLDHSPWKIRALIADFHDMKKFFESI 688
++ + + E DA+ + ++ D P ++ + D + FE +
Sbjct: 192 LEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSD-DFWP-TLQPALEDIQQLLHHFEEV 249
Query: 689 VFKFIPREGNSAAHSLAK--YAFENNVSKL 716
F+F PR GN A +A+ +F N KL
Sbjct: 250 KFEFTPRGGNKVADRIARESISFSNYDPKL 279
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 25/302 (8%)
Query: 425 LVPRVLYFIWRVLHNAIPVKTISMKFNTSEPKLCTFCFEHEETIDHLFLRCKFSKEIWFK 484
+ P++ +F+WR + A+ T N +C C EETI H+ C +++ +W
Sbjct: 42 VAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRS 101
Query: 485 SPLGLRTEEYLSVQEMIKDWLNKQWNIEGIK--------LGMYLLWQMWKSRNKIVFEGA 536
+ + + + +D LN+ + + L +++W++WKSRN +F+
Sbjct: 102 ANIIIGNQ--WGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQK 159
Query: 537 KLD---ESWILTTTAKMYLDYEEHREKED--ESLNPIEQPFI-SETWETPNANVVKINVD 590
E+ A +L+ E E + + NPI+ S W P VK N D
Sbjct: 160 CQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFD 219
Query: 591 GAFSVNQGA----AACIARNHQGEILACETKTFLANT-SMESECRSIILGIELTIHLSLT 645
++ QG+ + R G I+ C ++T S+ +E + +++ L
Sbjct: 220 SGYT--QGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLR 277
Query: 646 CCEIEGDAKMALQACSTHLDHSPWKIRALIADFHDMKKFFESIVFKFIPREGNSAAHSLA 705
E D+K + + DHS + LI D +F+ RE NSAA +LA
Sbjct: 278 YVWFESDSKSLVTLINNGEDHS--LLGTLIYDIRHWMLKLPYCSLEFVNRERNSAADALA 335
Query: 706 KY 707
+
Sbjct: 336 SH 337