BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000093.1_g0070.1
         (342 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    55   5e-09

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 55.1 bits (131), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 179 VFKDIRTRQTIGYGVRRGKLYYLDLVSESSNKLRQALVVKNFETKNKDEIWLWHRRLGHA 238
           V K ++  +TI  G R   LY L    E+           N     KDE  LWH RL H 
Sbjct: 28  VLKVLKGCRTILKGNRHDSLYILQGSVETGES--------NLAETAKDETRLWHSRLAHM 79

Query: 239 SFGYLKKLFPSLFIKCD-VSSFQ-CDVCALAKSHCASFPLNLNKSPTPFMILHSDVWGPS 296
           S   ++ L    F+    VSS + C+ C   K+H  +F    + +  P   +HSD+WG  
Sbjct: 80  SQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAP 139

Query: 297 KVP 299
            VP
Sbjct: 140 SVP 142

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