BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0080.1
(510 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 143 1e-36
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 120 3e-29
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 94 8e-21
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 89 5e-19
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 77 3e-15
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 143 bits (360), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/522 (25%), Positives = 234/522 (44%), Gaps = 36/522 (6%)
Query: 5 NQALIGKLVWRFVNEPNALWVRLLKAKYLKHLDFWQFKPKQSALSTA---TWQGILKMRE 61
N AL+GK +WR ++ P +L ++ K++Y D P + L + W+ I +E
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSD-----PLNAPLGSRPSFVWKSIHASQE 119
Query: 62 RVKEGMCFLVGNGKNIRIWRDPWV---PTLRGFIPGKRSDRE--ALPSPIFVHDLIDGQG 116
+++G +VGNG++I IWR W+ P + +E ++ S + V DLID G
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 117 L-WKKSIIEQLFDSLAAKEILKIKLPRRDTSDKMVWIQTEKGVFTTKSLY---KSIIKAK 172
W+K +IE LF + K I +++ R D W T G +T KS Y II +
Sbjct: 180 REWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 173 PSTSKTLELPNELKWKKVWSKFNLAPRVRTFIWRILNDALPTKKRALRFNTTISQLCEFC 232
S + E ++K+W K +P+++ F+W+ L+++LP + + C C
Sbjct: 240 SSPQEVSEPSLNPIYQKIW-KSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRC 298
Query: 233 SEEVEDIDHIFKNCRMARETWICPPLNLRLEGQRSFHDILCD--WI-----AGEEEEKIV 285
E ++H+ C AR TW + + L G+ + I + W+ + EK
Sbjct: 299 PSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWA-DSIYVNLYWVFNLGNGNPQWEKAS 357
Query: 286 TLRFCVAWYLWKARNKLVFDKFLQGGRQIINAAMKLNDEF--MNSGHSLGASSEENMLIN 343
L + W LWK RN+LVF ++++ A +E+ S G + N +
Sbjct: 358 QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNR-SS 416
Query: 344 SEVWKPPLTEELKVNFDAGYKEGQAK--LAAVCRTSTGDFV-MALAHETSATSTLEAEAK 400
W+PP + +K N DA + + + V R G+ M S LEAE +
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELE 476
Query: 401 AALLASMLAADLPQYDFII-EGDALNVVTTCSNLEDDIPWKIRSIVLDIKNNTALLNKCS 459
A A +L+ QY+++I E D+ ++ +N D+I ++ + D++ + +
Sbjct: 477 AMRWA-VLSLSRFQYNYVIFESDSQVLIEILNN--DEIWPSLKPTIQDLQRLLSQFTEVK 533
Query: 460 FAYCPRNANKVAHLLANSYTRNNSDTPSVLITVPESIVSQLE 501
F + PR N +A +A + P + VP S ++
Sbjct: 534 FVFIPREGNTLAERVARESLSFLNYDPKLYSIVPSWARSSMD 575
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 120 bits (302), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 128/488 (26%), Positives = 214/488 (43%), Gaps = 73/488 (14%)
Query: 28 LKAKYLKHLDFWQFKPKQSALSTATWQGILKMRERVKEGMCFLVGNGKNIRIWRDPWVPT 87
+KA+Y K + K ++ + W +L +K+G L+G+G+NIRI D V +
Sbjct: 1 MKARYFKDVSILDAKVRKQ--QSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDS 58
Query: 88 LRGFIPGKRSDREALPSPIFVHDLIDGQG---LWKKSIIEQLFDSLAAKEILKIKLPRRD 144
P + + E + +++L + +G W S I Q D I +I L +
Sbjct: 59 H----PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSK 114
Query: 145 TSDKMVWIQTEKGVFTTKSLYKSIIKAKPSTS-KTLELPN---ELKWKKVWSKFNLAPRV 200
DK++W G +T +S Y ++ PST+ + P+ +LK ++W+ + P++
Sbjct: 115 KPDKIIWNYNTTGEYTVRSGY-WLLTHDPSTNIPAINPPHGSIDLK-TRIWN-LPIMPKL 171
Query: 201 RTFIWRILNDALPTKKRALRFNTTISQLCEFCSEEVEDIDHIFKNCRMARETW------- 253
+ F+WR L+ AL T +R I C C E E I+H C A W
Sbjct: 172 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSL 231
Query: 254 -------------ICPPLNLRLEGQRS-FHDILCDWIAGEEEEKIVTLRFCVAWYLWKAR 299
I LN + S FH +L W+ W +WKAR
Sbjct: 232 IRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWL---------------IWRIWKAR 276
Query: 300 NKLVFDKFLQGGRQIINAAMKLNDEFMNS--GHSLGASSEENMLINSEVWKPPLTEELKV 357
N +VF+KF + + + +A +++N+ H S + N W+ P +K
Sbjct: 277 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 336
Query: 358 NFDAGY--KEGQAKLAAVCRTSTGDFV----MALAHETSATSTLEAEAKAALLASMLAAD 411
NFDAG+ ++ +A + R G + M LAH ++ LEAE K ALLA++
Sbjct: 337 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH---TSNPLEAETK-ALLAALQQTW 392
Query: 412 LPQY-DFIIEGDALNVVTTCSNLEDDIPWKIRSIVLDIKNNTALLNKCS---FAYCPRNA 467
+ Y +EGD ++ NL + I + S+ +++ + NK + F + R
Sbjct: 393 IRGYTQVFMEGDCQTLI----NLINGISFH-SSLANHLEDISFWANKFASIQFGFIRRKG 447
Query: 468 NKVAHLLA 475
NK+AH+LA
Sbjct: 448 NKLAHVLA 455
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 94.4 bits (233), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 136/308 (44%), Gaps = 25/308 (8%)
Query: 188 KKVWSKFNLAPRVRTFIWRILNDALPTKKRALRFNTTISQLCEFCSEEVEDIDHIFKNCR 247
+ +W K ++AP+++ F+WR + AL T R N +C+ C E E I HI NC
Sbjct: 35 QAIW-KLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCP 93
Query: 248 MARETWICPPLNLRLEGQ----RSFHDILCDWIAGEEEEKIVTLR----FCVAWYLWKAR 299
+ W N+ + Q SF D L I + + +L F + W LWK+R
Sbjct: 94 YTQSVWRS--ANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 300 NKLVFDKFLQG-------GRQIINAAMKLNDEFMNSGHSLGASSEENMLINSEVWKPPLT 352
N +F + Q G Q + N+ N+ + + + +S W PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 353 EELKVNFDAGYKEGQ--AKLAAVCRTSTGDFVM-ALAHETSATSTLEAEAKAALLA-SML 408
+K NFD+GY +G + R G V+ A S+T +L AEA L A ++
Sbjct: 212 GWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVI 271
Query: 409 AADLPQYDFIIEGDALNVVTTCSNLEDDIPWKIRSIVLDIKNNTALLNKCSFAYCPRNAN 468
A +Y + E D+ ++VT +N ED + +++ DI++ L CS + R N
Sbjct: 272 WAHGLRYVW-FESDSKSLVTLINNGEDHS--LLGTLIYDIRHWMLKLPYCSLEFVNRERN 328
Query: 469 KVAHLLAN 476
A LA+
Sbjct: 329 SAADALAS 336
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 89.0 bits (219), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 138/330 (41%), Gaps = 19/330 (5%)
Query: 189 KVWSKFNLAPRVRTFIWRILNDALPTKKRALRFNTTISQLCEFCSEEVEDIDHIFKNCRM 248
K+W K AP+++ F+W++L+ AL T R + C C +E E H+F +C
Sbjct: 17 KIW-KLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFY 75
Query: 249 ARETWIC---PPLNLRLEG--QRSFHDILCDWIAGEEEEKIVTLRFCVAWYLWKARNKLV 303
A++ W P LR G + ++L + ++ L + W LWK+RN+LV
Sbjct: 76 AQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLV 135
Query: 304 FDK-------FLQGGRQIINAAMKLNDEFMNSGHSLGASSEENMLINSEVWKPPLTEELK 356
F + LQ R + N + + +S + + W+ P + +K
Sbjct: 136 FQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIK 195
Query: 357 VNFDAGYKEG--QAKLAAVCRTSTGDFVMALAHETSATS-TLEAEAKAALLASMLAADLP 413
N+D + AK + R G ++ + S TS +LE+E +A ++A A
Sbjct: 196 YNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQG 255
Query: 414 QYDFIIEGDALNVVTTCSNLEDDIPWKIRSIVLDIKNNTALLNKCSFAYCPRNANKVAHL 473
I EGD+ V +N + + + + + + + + F + PR N+ A +
Sbjct: 256 YRKVIFEGDSKQVEELMNN--EKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQPADI 313
Query: 474 LANSYTRNNSDTPSVLITVPESIVSQLETD 503
LA + + N VP I S L D
Sbjct: 314 LAKHHLQPNQSF-KFHYYVPAFITSTLYYD 342
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 20/286 (6%)
Query: 229 CEFCSEEVEDIDHIFKNCRMARETWICPPLNLRLEGQ--RSFHDILCDWIAGEEEE---- 282
C C + E ++H+ C AR W P+ EG+ S + L W+ E E
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLY-WVLNLEVEIPKL 70
Query: 283 -KIVTLRFCVAWYLWKARNKLVFDKFLQGGRQIINAAMKLNDEFMN----SGHSLGASSE 337
KI L + W LWK+RN+L+F +++ AM+ +E+ G + G E
Sbjct: 71 GKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVE 130
Query: 338 ENMLINSEVWKPPLTEELKVNFDAGYK--EGQAKLAAVCRTSTGDFVMALAHETSAT-ST 394
N+ + WK P + +K N DA ++ + + + R +G + A T +
Sbjct: 131 RNLSVQ---WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNV 187
Query: 395 LEAEAKAALLASMLAADLPQYDFIIEGDALNVVTTCSNLEDDIPWKIRSIVLDIKNNTAL 454
LEAE +A A + + I E DA +V ++ DD ++ + DI+
Sbjct: 188 LEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNS--DDFWPTLQPALEDIQQLLHH 245
Query: 455 LNKCSFAYCPRNANKVAHLLANSYTRNNSDTPSVLITVPESIVSQL 500
+ F + PR NKVA +A ++ P + VP+ + S L
Sbjct: 246 FEEVKFEFTPRGGNKVADRIARESISFSNYDPKLFSIVPQWLRSTL 291