BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0090.1
(477 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 76 2e-16
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 72 4e-13
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 65 7e-11
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 65 7e-11
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 65 1e-10
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 75.9 bits (185), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 248 LLNDRPKGFFYSKRGLRQGCPLSPYLFILCSETLTKLVVQAETNGLYHGLKINRYAPSIS 307
++N P+G RGLRQG PLSPYLFILC+E L+ L +A+ G G++++ +P I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 308 HLTFADD 314
HL FADD
Sbjct: 73 HLLFADD 79
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 55 ISLPPTKEEIWQTVKEMKSCKAPGPDGFSAIFYKRCWNVIGDEVTSQIRTIFDSGQLPGN 114
+S P+ +EI V M KAPGPD F+A F+ W V+ D + ++ F +G L
Sbjct: 527 LSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKR 586
Query: 115 LNHTNIALIPKNKIAERPIDYRPIALCNVLYRVIT 149
N T I LIPK ++ +RP++ C V+Y++IT
Sbjct: 587 FNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 302 YAPSISHLTFADDLFFFGKVSNENINALKKLLDCYANCSGQKINYTKSSLHLSANCAIEK 361
Y I+HL FADDL F +I + ++ +A+ SG +I+ KS++++ A
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDND 62
Query: 362 KEGILNVMGVKEMDSEDVYLENFLLKPKYKISSYDYIVQKVEKKLMGWKRNTLSHAGRTT 421
K IL+ YL LL K S Y +V+K+ ++ W LS AGR
Sbjct: 63 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 422 LLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWW 457
L+ S + S+ +++S +P I +I+ +F W
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLW 158
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 302 YAPSISHLTFADDLFFFGKVSNENINALKKLLDCYANCSGQKINYTKSSLHLSANCAIEK 361
Y I+HL FADDL F +I + ++ +A+ SG +I+ KS++++ A
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDND 62
Query: 362 KEGILNVMGVKEMDSEDVYLENFLLKPKYKISSYDYIVQKVEKKLMGWKRNTLSHAGRTT 421
K IL+ YL LL K S Y +V+K+ ++ W LS AGR
Sbjct: 63 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 422 LLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWW 457
L+ S + S+ +++S +P I +I+ +F W
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLW 158
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 302 YAPSISHLTFADDLFFFGKVSNENINALKKLLDCYANCSGQKINYTKSSLHLSANCAIEK 361
Y I+HL FADDL F +I + ++ +A+ SG +I+ KS+++++
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA------- 56
Query: 362 KEGILNVMGVKEMDSEDV--------------YLENFLLKPKYKISSYDYIVQKVEKKLM 407
GVK+ D D+ YL LL K S Y +V+K+ ++
Sbjct: 57 --------GVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIG 108
Query: 408 GWKRNTLSHAGRTTLLKSELSSIPIYFLSTNLVPKGVIDKIEKCQRNFWWGHNSEVSKMH 467
W LS AGR L+ S + S+ +++S +P I +I+ +F W +K
Sbjct: 109 KWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKA 168
Query: 468 YINW 471
+ W
Sbjct: 169 KVAW 172