BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0130.1
(239 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 91 7e-21
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 73 6e-15
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 73 1e-14
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 66 2e-12
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 63 3e-11
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 91.3 bits (225), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 32/256 (12%)
Query: 5 PCIKLFLWKCCTNSLPVKEKIG-KFIGNSYSCINCND-NETLDHVMLHCTFAKAIWFHFQ 62
P I+ FLWKC +NSLPV + + + +CI C ET++H++ CTFA+ W
Sbjct: 264 PKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISS 323
Query: 63 VR-------TDQLTTVNQWI-------QQWKTLDEEHTNLCAKILWFIWKARCENCFSTN 108
+ D + W+ QW E+ + L +LW +WK R E F
Sbjct: 324 IPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EKASQLVPWLLWRLWKNRNELVFRGR 379
Query: 109 KQNPRQMIERINNTSTTLLKIESIITNKCRINTKQQI-------WRPPSTPFLKLNVDAS 161
+ N ++++ R + L+ I T TK Q+ WRPP ++K N DA+
Sbjct: 380 EFNAQEVLRRAEDD----LEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDAT 435
Query: 162 FSTFTEPAGIGCIIRDEETNFIIAAADSV-RCQNAEECESIAILSSLLWAIQLSITHVHV 220
++ E GIG ++R+E+ A ++ + ++ E E A+ ++L + +V
Sbjct: 436 WNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIF 495
Query: 221 DSDNQALIHFINGKSV 236
+SD+Q LI +N +
Sbjct: 496 ESDSQVLIEILNNDEI 511
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 72.8 bits (177), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 26/248 (10%)
Query: 4 IPCIKLFLWKCCTNSLPVKEK-IGKFIGNSYSCINCNDNETLDHVMLHCTFAKAIW---- 58
+P IKLFLWK +LPV + + + I +++ C C ET H++ HC FA +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 59 ---FHFQVRTDQLTTVNQWIQQ--WKTLDEEHTNLCAKILWFIWKARCENCFSTNKQNPR 113
H + T L +N + + L I W IWKAR + F + +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFS-- 118
Query: 114 QMIERINNTSTTLLKIES--IITNKCRINTKQQIWRPPSTPFLKLN----VDASFSTFTE 167
+IE + L +S + K R+ T RP ST L + VDA++ +
Sbjct: 119 -VIETVTKAVQDALAWQSAQLALPKVRVATP----RPNSTTTLTHDFLCYVDAAWQQQSS 173
Query: 168 PAGIGCIIR---DEETNFIIAAADSVRCQNAEECESIAILSSLLWAIQLSITHVHVDSDN 224
AG G + + E +A R + E+ AI S++L A+QL + + V SD+
Sbjct: 174 LAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDS 233
Query: 225 QALIHFIN 232
++++ +N
Sbjct: 234 KSIVDALN 241
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 119/255 (46%), Gaps = 23/255 (9%)
Query: 1 MNMIPCIKLFLWKCCTNSLPVKEKIG-KFIGNSYSCINCN-DNETLDHVMLHCTFAKAIW 58
+ ++P +K FLW+ + +L E++ + + SC C+ +NE+++H + C FA W
Sbjct: 165 LPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 224
Query: 59 -------FHFQVRT----DQLTTVNQWIQQWKTLDEEHTNLCAKILWFIWKARCENCFST 107
Q+ + + ++ + ++Q T+ + H L ++W IWKAR F+
Sbjct: 225 RLSDSSLIRNQLMSNDFEENISNILNFVQD-TTMSDFHKLLPVWLIWRIWKARNNVVFNK 283
Query: 108 NKQNPRQMIERINNTSTTLLKIESIITNKCRINTKQQI------WRPPSTPFLKLNVDAS 161
+++P + + ++ + T + + ++K + +QI WR P ++K N DA
Sbjct: 284 FRESPSKTV--LSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAG 341
Query: 162 FSTFTEPAGIGCIIRDEETNFII-AAADSVRCQNAEECESIAILSSLLWAIQLSITHVHV 220
F A G IIR+ I + N E E+ A+L++L T V +
Sbjct: 342 FDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFM 401
Query: 221 DSDNQALIHFINGKS 235
+ D Q LI+ ING S
Sbjct: 402 EGDCQTLINLINGIS 416
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 34 SCINCNDN-ETLDHVMLHCTFAKAIW-------FHFQVRTDQLTTVNQWIQQWKTLDEEH 85
SC+ C D+ ET++H++ C FA+ +W + TD L W+ L+ E
Sbjct: 11 SCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVL---NLEVEI 67
Query: 86 T------NLCAKILWFIWKARCENCFSTNKQNPRQMIERINNTS---TTLLKIESIITNK 136
NL +LW +WK+R E F + + +++ R +T ++E +
Sbjct: 68 PKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGP 127
Query: 137 CRINTKQQIWRPPSTPFLKLNVDASFSTFTEPAGIGCIIRDEETNFIIAAADSV-RCQNA 195
W+ P ++K N DA++ GIG I+R+E + A ++ R +N
Sbjct: 128 QVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNV 187
Query: 196 EECESIAILSSLLWAIQLSITHVHVDSDNQALIHFIN 232
E E A+ ++L + + + +SD QAL++ +N
Sbjct: 188 LEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLN 224
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 40/263 (15%)
Query: 1 MNMIPCIKLFLWKCCTNSLPVKEKI-GKFIGNSYSCINC-NDNETLDHVMLHCTFAKAIW 58
+++ P IK FLW+C T +L ++ + I C C + ET+ H+M +C + +++W
Sbjct: 40 LHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVW 99
Query: 59 FHFQVRTDQLTTVNQW---------------IQQWKTLDEEHTNLCAKILWFIWKARCEN 103
R+ + NQW + + +T + L I+W +WK+R
Sbjct: 100 -----RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVF 154
Query: 104 CFSTNKQNP--------RQMIERINNTSTTLLKIESIITNKCRINTKQQI-WRPPSTPFL 154
F Q+P + E +N TT + TN + + + W PP ++
Sbjct: 155 LFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWV 214
Query: 155 KLNVDASFSTFTEPAGIGCIIRDEETNFIIAAADSVRCQNAE---ECESIAILSSL--LW 209
K N D+ ++ + G IR E N I + + Q++ E++ L +L +W
Sbjct: 215 KCNFDSGYTQGSPYTRSGWTIR--ECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIW 272
Query: 210 AIQLSITHVHVDSDNQALIHFIN 232
A L +V +SD+++L+ IN
Sbjct: 273 AHGLR--YVWFESDSKSLVTLIN 293