BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0180.1
(374 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 72 2e-13
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 59 3e-09
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 55 4e-08
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 1e-06
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 49 3e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 120/300 (40%), Gaps = 43/300 (14%)
Query: 71 LLSQAGRSMVISTIAATENGEDTIRWHLTKSGNYTINFMYH------NLRTTRYATQNDV 124
L + R ++ D+ W T SG+YT+ Y N R++
Sbjct: 190 LFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPS 249
Query: 125 IELFF--IWKINTTHRIKLFLWKCCTNSLSIRDKIG-KYIGNN---YKCPNYNNNETIDH 178
+ + IWK T+ +I+ FLWKC +NSL + + +++ +CP+ ET++H
Sbjct: 250 LNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC--KETVNH 307
Query: 179 ALLHRVHARSIWFYFNILTDDTNTVRD-------WML-------QWKDLDDDLVNLYAKI 224
L AR W +I D W+ QW+ L +
Sbjct: 308 LLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKAS----QLVPWL 363
Query: 225 LWLILKARCEKCFSKQIQTPTHVINKIK--------ATSTKPLKTNTRADNKRYHFWRPP 276
LW + K R E F + V+ + + T + T + + WRPP
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423
Query: 277 SAPYLKINVDASFKSLTELAGIGCIMYDDQAN--FISAMTDTTRGQSAEECECKAIRWAI 334
++K N DA++ E GIG ++ +++ ++ A + +S E E +A+RWA+
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEAMRWAV 482
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 49/306 (16%)
Query: 69 TNLLSQAGRSMVISTIAATENGEDTIRWHLTKSGNYTINFMY----HNLRTTRYA--TQN 122
+ + Q+ + A D I W+ +G YT+ Y H+ T A +
Sbjct: 94 SQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPH 153
Query: 123 DVIEL-FFIWKINTTHRIKLFLWKCCTNSLSIRDKI---GKYIGNNYKCPN-YNNNETID 177
I+L IW + ++K FLW+ + +L+ +++ G I + CP + NE+I+
Sbjct: 154 GSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRI--DPSCPRCHRENESIN 211
Query: 178 HALLHRVHARSIWFYFNILTDDTNTVRDWMLQWKDLDDDLVNL-----------YAKIL- 225
HAL A W D++ +R+ ++ D ++++ N+ + K+L
Sbjct: 212 HALFTCPFATMAW-----RLSDSSLIRNQLMS-NDFEENISNILNFVQDTTMSDFHKLLP 265
Query: 226 ----WLILKARCEKCFSKQIQTPTHVINKIKATS-----------TKPLKTNTRADNKRY 270
W I KAR F+K ++P+ + KA + P T A+NK
Sbjct: 266 VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIE 325
Query: 271 HFWRPPSAPYLKINVDASFKSLTELAGIGCIMYDDQANFIS-AMTDTTRGQSAEECECKA 329
WR P A Y+K N DA F A G I+ + IS + E E KA
Sbjct: 326 --WRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKA 383
Query: 330 IRWAIQ 335
+ A+Q
Sbjct: 384 LLAALQ 389
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 25/208 (12%)
Query: 130 IWKINTTHRIKLFLWKCCTNSLSIRDKIG-KYIGNNYKCPN-YNNNETIDHALLHRVHAR 187
IWK+ T +IK FLWK + +L+ D + ++I N+ +C +ET H +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 188 SIWFYFNILTDDTNTVRDWMLQWKDL---------DDDLVNLYAKILWLILKARCEKCFS 238
+W I + T M +L L NL ILW + K+R + F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 239 KQ-------IQTPTHVINKIKATSTKPLKTNTRADNKRYHF-------WRPPSAPYLKIN 284
++ +Q + + + + T+T N + + R+ W+ P + ++K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 285 VDASFKSLTELAGIGCIMYDDQANFISA 312
D +F T A G +M D+ ++ +
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVYMGS 225
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 262 NTRADNKRYHFWRPPSAPYLKINVDASFKSLTELAGIGCIMYDDQANFISAMTDTTRGQ- 320
N AD R W PP LK N DAS ++G+G I+ + Q I +G+
Sbjct: 94 NRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRM 153
Query: 321 SAEECECKAIRWAIQ 335
+ EE EC + WAIQ
Sbjct: 154 TTEEAECSTLIWAIQ 168
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 44/195 (22%)
Query: 130 IWKINTTHRIKLFLWKCCTNSLSIRDKI-GKYIGNNYKCPNYN-NNETIDHALLHRVHAR 187
IWK++ +IK FLW+C T +L+ ++ + I + C ETI H + + + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 188 SIWFYFNILTDDTNTVRDWMLQW---KDLDDDLVNLYAK----------------ILWLI 228
S+W NI+ + QW +D+L L I+W +
Sbjct: 97 SVWRSANIIIGN---------QWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRL 147
Query: 229 LKARCEKCFSKQIQTPTHVINKIKATSTKPLKTNTRADNKRYHF--------------WR 274
K+R F ++ Q+P + K +T+ L N +N H W
Sbjct: 148 WKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWN 207
Query: 275 PPSAPYLKINVDASF 289
PP ++K N D+ +
Sbjct: 208 PPPEGWVKCNFDSGY 222