BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0410.1
(417 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 140 2e-36
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 115 1e-27
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 89 2e-19
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 86 1e-18
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 86 3e-18
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 140 bits (354), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 202/437 (46%), Gaps = 65/437 (14%)
Query: 9 INTGANINVWSDNWIPNHP----------PPITNHTGSNIKWVAQLI--TNNTWNFQILQ 56
+ G +I +W W+ + P PP + S+I V+ LI + W +++
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 57 QCFNDDICSAILNINLQNNQ-EDKPIWTLTKSGNFSIKSMYYYL------RTESMNVTQD 109
F + I + + D W T SG++++KS Y+ L R+ V++
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 110 HIE--WGFIWNLNTIPRVKIFLWKCCTNSLPVKAKIG-KFIGDQFSCINCDE-NETLDHV 165
+ + IW T P+++ FLWKC +NSLPV + + + + +CI C ET++H+
Sbjct: 249 SLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHL 308
Query: 166 TLHCTFAKAIWFNYDVR-------TDQISSTNQWI-------SQWKTLNEDTTNQYAKIL 211
CTFA+ W + D I W+ QW E + +L
Sbjct: 309 LFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EKASQLVPWLL 364
Query: 212 WFIWKARCENSFNTNKQNPRQIIDRINNVSITPLKIETVITNKCRKSTKEQ-------KW 264
W +WK R E F + N ++++ R + + +I T C TK Q +W
Sbjct: 365 WRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTE-AESC--GTKPQVNRSSCGRW 420
Query: 265 RPPSTPYLKLNVDASFTKATKPAGIGCIIRDEESKFIIAAANSV-RSQNVEECEGLAILS 323
RPP ++K N DA++ + + GIG ++R+E+ + A ++ + ++V E E L
Sbjct: 421 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE----LE 476
Query: 324 SMQWAL----QLKITHAHIESDNQALIKFINGHNIGLHWQSLK-MIQQIQSLINNFEGIM 378
+M+WA+ + + + ESD+Q LI+ +N I W SLK IQ +Q L++ F +
Sbjct: 477 AMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVK 533
Query: 379 FTYVSRDCNAPADAIAK 395
F ++ R+ N A+ +A+
Sbjct: 534 FVFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 115 bits (287), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 180/426 (42%), Gaps = 46/426 (10%)
Query: 9 INTGANINVWSDNWIPNHPP-PITNHTGSNIKWVAQLITNNT----WNFQILQQCFNDDI 63
I G NI + DN + +HPP P+ + L W+ + Q +
Sbjct: 42 IGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSD 101
Query: 64 CSAILNINL-QNNQEDKPIWTLTKSGNFSIKSMYYYLRTE-SMNVTQDHIEWGFI----- 116
I I L ++ + DK IW +G ++++S Y+ L + S N+ + G I
Sbjct: 102 HGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR 161
Query: 117 -WNLNTIPRVKIFLWKCCTNSLPVKAKI-GKFIGDQFSCINCD-ENETLDHVTLHCTFAK 173
WNL +P++K FLW+ + +L ++ + + SC C ENE+++H C FA
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 221
Query: 174 AIWFNYD---VRTDQISST-NQWISQWKTLNEDTT-NQYAKIL-----WFIWKARCENSF 223
W D +R +S+ + IS +DTT + + K+L W IWKAR F
Sbjct: 222 MAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVF 281
Query: 224 NTNKQNPRQII--------DRINNVSI---TPLKIETVITNKCRKSTKEQKWRPPSTPYL 272
N +++P + + D +N TP + NK +WR P Y+
Sbjct: 282 NKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKI-------EWRNPPATYV 334
Query: 273 KLNVDASFTKATKPAGIGCIIRDEESKFII-AAANSVRSQNVEECEGLAILSSMQWALQL 331
K N DA F A G IIR+ I + + N E E A+L+++Q
Sbjct: 335 KCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIR 394
Query: 332 KITHAHIESDNQALIKFINGHNIGLHWQSLKMIQQIQSLINNFEGIMFTYVSRDCNAPAD 391
T +E D Q LI ING I H ++ I N F I F ++ R N A
Sbjct: 395 GYTQVFMEGDCQTLINLING--ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAH 452
Query: 392 AIAKWG 397
+AK+G
Sbjct: 453 VLAKYG 458
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 28/293 (9%)
Query: 122 IPRVKIFLWKCCTNSLPVKAK-IGKFIGDQFSCINCDENETLDHVTLHCTFAKAIWFNYD 180
+P++K+FLWK +LPV A+ + + I + C C ET H+ HC FA +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 181 VRTDQISSTNQWISQWKTLNE---------DTTNQYAKILWFIWKARCENSFNTNKQNPR 231
++ I + L + T + I W IWKAR + F + +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFS-- 118
Query: 232 QIIDRINNVSITPLKIET--VITNKCRKSTKEQKWRPPSTPYLKLN----VDASFTKATK 285
+I+ + L ++ + K R +T RP ST L + VDA++ + +
Sbjct: 119 -VIETVTKAVQDALAWQSAQLALPKVRVATP----RPNSTTTLTHDFLCYVDAAWQQQSS 173
Query: 286 PAGIGCIIR---DEESKFIIAAANSVRSQNVEECEGLAILSSMQWALQLKITHAHIESDN 342
AG G + + E + +A R + E AI S+M ALQL+ + + SD+
Sbjct: 174 LAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDS 233
Query: 343 QALIKFINGHNIGLHWQSLKMIQQIQSLINNFEGIMFTYVSRDCNAPADAIAK 395
++++ +N N+ L+ + ++ +I+S+ N F I F ++ R N+ ADA AK
Sbjct: 234 KSIVDALNS-NVSLN-EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 37/269 (13%)
Query: 152 SCINC-DENETLDHVTLHCTFAKAIW-------FNYDVRTDQISSTNQWISQWKTLNEDT 203
SC+ C D ET++H+ C FA+ +W + TD + + W+ LN +
Sbjct: 11 SCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWV-----LNLEV 65
Query: 204 T--------NQYAKILWFIWKARCENSFNTNKQNPRQIIDRINNVS---ITPLKIETVIT 252
N +LW +WK+R E F + + +++ R T ++E +
Sbjct: 66 EIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKAS 125
Query: 253 NKCRKSTKEQKWRPPSTPYLKLNVDASFTKATKPAGIGCIIRDEESKFIIAAANSV-RSQ 311
+ +W+ P ++K N DA++ GIG I+R+E + A ++ R++
Sbjct: 126 GPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTK 185
Query: 312 NVEECEGLAILSSMQWAL----QLKITHAHIESDNQALIKFINGHNIGLHWQSLK-MIQQ 366
NV E E L +++WA+ + ESD QAL+ +N + W +L+ ++
Sbjct: 186 NVLEAE----LEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDF---WPTLQPALED 238
Query: 367 IQSLINNFEGIMFTYVSRDCNAPADAIAK 395
IQ L+++FE + F + R N AD IA+
Sbjct: 239 IQQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 26/325 (8%)
Query: 116 IWNLNTIPRVKIFLWKCCTNSLPVKAKIGK-FIGDQFSCINC-DENETLDHVTLHCTFAK 173
IW L T P++K FLWK + +L + + I + C C E+ET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 174 AIWFNYDVRTDQISSTNQWISQWKTL---------NEDTTNQYAKILWFIWKARCENSFN 224
+W + ++ +T + L N ILW +WK+R + F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 225 TNKQNPRQIIDRINN---------VSITPLKIETVITNKCRKSTKEQKWRPPSTPYLKLN 275
+ + + R N + L + + + + KW+ P + ++K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 276 VDASFTKATKPAGIGCIIRDEESKFIIA--AANSVRSQNVEECEGLAILSSMQWALQLKI 333
D +F T+ A G ++RDE ++ + A S S ++ E E A++ +MQ A
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSL-ESEFQALIIAMQHAWSQGY 256
Query: 334 THAHIESDNQALIKFINGHNIGLHWQSLKMIQQIQSLINNFEGIMFTYVSRDCNAPADAI 393
E D++ + + +N N L++ I++ + FE +F +V R N PAD +
Sbjct: 257 RKVIFEGDSKQVEELMN--NEKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQPADIL 314
Query: 394 AKWG-RRNGERKEWNSVPSFVSALL 417
AK + N K VP+F+++ L
Sbjct: 315 AKHHLQPNQSFKFHYYVPAFITSTL 339