BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0420.1
(143 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 9e-08
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 9e-08
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 47 1e-06
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 50.1 bits (118), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 28 ATNNEAEYDALIAGLTLAKELGIQNLDVRSDSQFVVNQLQGTYQTKDARMTTYLEHVREM 87
ATNN AEY AL+ GL A + G +N+ V DS V Q+QG ++T +M + +E+
Sbjct: 194 ATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKEL 253
Query: 88 QKYF 91
F
Sbjct: 254 MNSF 257
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 50.1 bits (118), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 28 ATNNEAEYDALIAGLTLAKELGIQNLDVRSDSQFVVNQLQGTYQTKDARMTTYLEHVREM 87
ATNN AEY AL+ GL A + G +N+ V DS V Q+QG ++T +M + +E+
Sbjct: 194 ATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKEL 253
Query: 88 QKYF 91
F
Sbjct: 254 MNSF 257
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 47.0 bits (110), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 5 GLSVFLTSSEGNMVQHAILCEFK-----ATNNEAEYDALIAGLTLAKELGIQNLDVRSDS 59
G + L + +G+++ C + ATNN AEY ALI GL A E G +N+ V+ DS
Sbjct: 233 GAAAVLKTEDGSLI-----CRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDS 287
Query: 60 QFVVNQLQGTYQT 72
+ V Q++G ++
Sbjct: 288 KLVCMQIKGQWKV 300