BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0430.1
(349 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 67 7e-12
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 2e-10
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 2e-10
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 59 6e-10
AT1G43730.1 | RNA-directed DNA polymerase (reverse transcriptase... 58 3e-09
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 122/305 (40%), Gaps = 26/305 (8%)
Query: 41 KHSTYGCGVWKGLHSLLDKFRRLTRWEARDGNAIRFWSDVWVGTRSLKESFPL--IFQVS 98
K +YG W L + ++ TR DG IR +G ++ +S P +
Sbjct: 18 KQQSYG---WASLLDGIALLKKGTRHLIGDGQNIR------IGLDNIVDSHPPRPLNTEE 68
Query: 99 TDKEAMVSKMFNKE--LQVWEINVRRQLNDWEVESYVGLLNLIHEVKLNQEPDRRVWITD 156
T KE ++ +F ++ W+ + Q D +S G ++ I+ K +++PD+ +W +
Sbjct: 69 TYKEMTINNLFERKGSYYFWDDSKISQFVD---QSDHGFIHRIYLAK-SKKPDKIIWNYN 124
Query: 157 QKEELSVKQCYARLDSDSQIMTPTL-----AKVLRRRL----IPPRVGFMLWATILGKIP 207
E +V+ Y L D P + + L+ R+ I P++ LW + +
Sbjct: 125 TTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALA 184
Query: 208 TIEMLHRRGFQIPSRCVMCKEQEESSAHLFLHCKVAQELWSYFLGLLKIHWCMPSSPGMC 267
T E L RG +I C C + ES H C A W L + M +
Sbjct: 185 TTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEEN 244
Query: 268 LEQWEEVPKPKSKREIWNLVPGAIFWCIWKDRNNKIFKDANINSNLDVEDVKACILGWVK 327
+ + + + L+P + W IWK RNN +F + + V KA W+
Sbjct: 245 ISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLN 304
Query: 328 GSPKY 332
+ +
Sbjct: 305 ATQSH 309
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 175 QIMTPTL--AKVLRRRLIPPRVGFMLWATILGKIPTIEMLHRRGFQIPSRCVMCKEQEES 232
++ +PT+ AKV+ + PR + W + L ++PT + L G IPS V+C +E+
Sbjct: 119 RVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDET 178
Query: 233 SAHLFLHCKVAQELWSYFLGLLKIHWCMPSSP-GM-CLEQW-EEVPKPKSKREIWNLVPG 289
AHLF C + +W +F + PS P G+ W ++P I L+
Sbjct: 179 HAHLFFECSFSLAIWEFFASKFR-----PSPPFGLPAASSWILQLPLRSHSTTILKLLLQ 233
Query: 290 AIFWCIWKDRNNKIF 304
+ + +WK+RN +IF
Sbjct: 234 SAVYHVWKERNARIF 248
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 18/264 (6%)
Query: 67 EARDGNAIRFWSDVWVGTRSLKESF-PLIFQ-VSTDKEAMVSKMFNKELQVWEINVRRQL 124
E G +FW D W+G L E PL + V +A+V W I R
Sbjct: 15 EVGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRG--TSWWIASSRSR 72
Query: 125 NDWEVESYVGLLNLIHEVKL---NQEPDRRVWITD---QKEELSVKQCYARLDSDSQIMT 178
N V+ L NL+ E + Q D +W TD S + ++ L S +
Sbjct: 73 NPIIVQ----LKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVP 128
Query: 179 PTLAKVLRRRLIPPRVGFMLWATILGKIPTIEMLHRRGFQIPSRCVMCKEQEESSAHLFL 238
A + + P+ F+ W ++ T + L G IP+ C++C ++S AHLF
Sbjct: 129 WHKAVWFKNHV--PKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFF 186
Query: 239 HCKVAQELWSYFLGLLKIHWCMPSSPGMCLEQWEEVPKPKSKREIWNLVPGAIFWCIWKD 298
C+ + +W +F ++ P+ CL + K+ I L + + IW++
Sbjct: 187 ECQFSGVVWRFFTASTNLN--PPAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRE 244
Query: 299 RNNKIFKDANINSNLDVEDVKACI 322
RN ++ + ++ ++D++ I
Sbjct: 245 RNQRLHSGVSRSTESILKDIQLII 268
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 192 PRVGFMLWATILGKIPTIEMLHRRGFQIPSRCVMCKEQEESSAHLFLHCKVAQELWSYFL 251
P+ F+ W + ++ T + + GF P C+ C +E+ HLF C+ A+E+W YF
Sbjct: 54 PKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFT 113
Query: 252 GLLKIHWCMPSSPGMCLEQWEEVP-KPKSKREIWNLVPGAIFWCIWKDRNNKIFKDANIN 310
+ + + G+ +W + P + K+ I L A + IWK+RN ++ A+
Sbjct: 114 SRVHVFPPLLFEDGI---RWLKNPCQDKNVTTILRLSHHASVYTIWKERNARLHDSASRP 170
Query: 311 SNLDVEDVKACI 322
+ + ++K+ I
Sbjct: 171 AAALILEIKSVI 182
>AT1G43730.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:16508723-16509784 REVERSE LENGTH=320 | 201606
Length = 320
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 95/265 (35%), Gaps = 41/265 (15%)
Query: 39 KLKHSTYGCGVWKGLHSLLDKFRRLTRWEARDGNAIRFWSDVWVGTRSLKESFPLIFQVS 98
L +T +W+ L L + R + G +FW D W G PLI V
Sbjct: 42 TLNSTTSDSWIWRRLCKLREVARPFVVCDVGSGVTAKFWHDNWTGHG------PLIDLVG 95
Query: 99 TDKEAMVSKMFNKELQVWEINVRRQLNDWEVESYVGLLNLIHEVKLNQEPDRRVWITDQK 158
V + VGL++ H+ D +W TD
Sbjct: 96 PLGPQTVGLPIDA---------------------VGLIDCQHD-------DSFIWKTDLH 127
Query: 159 EE---LSVKQCYARLDSDSQIMTPTLAKVLRRRLIPPRVGFMLWATILGKIPTIEMLHRR 215
S + L + I+ A + + P+ F+ W ++ T + L
Sbjct: 128 APSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHV--PKHAFICWVVAWNRLHTRDRLRSW 185
Query: 216 GFQIPSRCVMCKEQEESSAHLFLHCKVAQELWSYFLGLLKIHWCMPSSPGMCLEQWEEVP 275
G IP+ C++C +ES AHLF C +W +F G + + P+ CL
Sbjct: 186 GLSIPAVCLLCNSHDESRAHLFFECPFCGAVWRFFTG--RANLFPPAQLMYCLIWLLNPS 243
Query: 276 KPKSKREIWNLVPGAIFWCIWKDRN 300
+ K+ I L A + IW++RN
Sbjct: 244 RDKNTTLIIRLAFQAYVYAIWRERN 268