BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0440.1
(1636 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 145 2e-35
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 110 5e-24
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 108 6e-24
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 108 6e-24
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 80 2e-17
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 189/404 (46%), Gaps = 24/404 (5%)
Query: 921 GDFNVIRFLYEKKNGKRITPSMR---DFGSWIDRNNLIDLPKQGMEFSWSNNQA-NPVLN 976
GDF+ I + + + + MR +F + + ++L+D+P +G+ ++WSN+Q NP++
Sbjct: 225 GDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIR 284
Query: 977 VLDRFLINGGWEAKFPKVEQIILPRPISDHAP-ILLRTEIGSSCPPPFRLEERWMQEEDF 1035
LDR + NG W + FP + +SDH+P I++ + FR F
Sbjct: 285 KLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTF 344
Query: 1036 YSKVDDWWKEAPSGESPKTAFWKKLHFVKEKLKAWSREKYNKFHKEFKKLQEDITALDRL 1095
+ W+E S + + L K+ K +R+ + + K+ ALD L
Sbjct: 345 LVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKE------ALDSL 398
Query: 1096 E--EGRVLSQMEFTERKAKRVELEK---LLGLEEVSLRQKSRAIWLKSGDKNTAFFHRTL 1150
E + ++L+ + + + V +K E RQKSR WL+ GD NT FFH+ +
Sbjct: 399 ESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVI 458
Query: 1151 KCRARQNRISFITKGSGNIVDEEEIMKEAI-EYFSKLY-CEPAIWRPGVSEMQITSLHAD 1208
+N I F+ V+ +KE I Y++ L + I P S +I +H
Sbjct: 459 LANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPD-SVQRIKDIHPF 517
Query: 1209 E-----ADQLEKDFSEEEVKAALSDLAKDKAPGPDGFPIMFFQKCWNIIKPDLMDLILDF 1263
A +L S++E+ AA+ + ++KAPGPD F FF + W ++K + + +F
Sbjct: 518 RCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEF 577
Query: 1264 SHSATLDWRLNQTFIVLIPKKASNSSFADFRPISLVGGVYKIIT 1307
+ L R N T I LIPK + FRP+S VYKIIT
Sbjct: 578 FRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 1462 INHLQFADDTLFFLDESSDQLSKLRDILVWYEISSGLKVNLKKSYIYEVNKGGEGNSNHD 1521
I HL FADD L F D + + I + SGL+++L+KS IY G + N D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA--GVKDNDKAD 65
Query: 1522 MLKGFGCPIGVLPTTYLGLPLEQRYKSKALWDPVLERVNRKLASWKSHVLSRGGKITLIK 1581
+L F G LP YLGLPL + + + + P++E++ ++ W + LS G++ LI
Sbjct: 66 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 125
Query: 1582 SVLQALPTYYLSLFSIPTGVLKEIETKMGKFLWNGKSDKKRLHWAAWKLICTDK 1635
SV+ +L +++S F +P+ +KEI++ FLW+G + AW +CT K
Sbjct: 126 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 179
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 1462 INHLQFADDTLFFLDESSDQLSKLRDILVWYEISSGLKVNLKKSYIYEVNKGGEGNSNHD 1521
I HL FADD L F D + + I + SGL+++L+KS IY G + N D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA--GVKDNDKAD 65
Query: 1522 MLKGFGCPIGVLPTTYLGLPLEQRYKSKALWDPVLERVNRKLASWKSHVLSRGGKITLIK 1581
+L F G LP YLGLPL + + + + P++E++ ++ W + LS G++ LI
Sbjct: 66 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 125
Query: 1582 SVLQALPTYYLSLFSIPTGVLKEIETKMGKFLWNGKSDKKRLHWAAWKLICTDK 1635
SV+ +L +++S F +P+ +KEI++ FLW+G + AW +CT K
Sbjct: 126 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 179
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 1462 INHLQFADDTLFFLDESSDQLSKLRDILVWYEISSGLKVNLKKSYIYEVNKGGEGNSNHD 1521
I HL FADD L F D + + I + SGL+++L+KS IY G + N D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA--GVKDNDKAD 65
Query: 1522 MLKGFGCPIGVLPTTYLGLPLEQRYKSKALWDPVLERVNRKLASWKSHVLSRGGKITLIK 1581
+L F G LP YLGLPL + + + + P++E++ ++ W + LS G++ LI
Sbjct: 66 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 125
Query: 1582 SVLQALPTYYLSLFSIPTGVLKEIETKMGKFLWNGKSDKKRLHWAAWKLICTDK 1635
SV+ +L +++S F +P+ +KEI++ FLW+G + AW +CT K
Sbjct: 126 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 179
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 80.5 bits (197), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 1404 LVNGKPSEVFQSSRGIRQGDPLSPFLFLMVGEVLSHCLQQAENRGWVKGFKVASNSRSIN 1463
++NG P + SRG+RQGDPLSP+LF++ EVLS ++A+ +G + G +V++NS IN
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 1464 HLQFADDT 1471
HL FADDT
Sbjct: 73 HLLFADDT 80